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Aliases for LOC100129083 Gene

Aliases for LOC100129083 Gene

  • Uncharacterized LOC100129083 3
  • Uncharacterized Protein LOC100129083 3
  • CTD-2616J11.2 3
  • AC008750.2 5

External Ids for LOC100129083 Gene

Previous GeneCards Identifiers for LOC100129083 Gene

  • GC19U900860
  • GC19P056611
  • GC19P051919

Summaries for LOC100129083 Gene

GeneCards Summary for LOC100129083 Gene

LOC100129083 (Uncharacterized LOC100129083) is a Protein Coding gene.

Additional gene information for LOC100129083 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129083 Gene

Genomics for LOC100129083 Gene

GeneHancer (GH) Regulatory Elements for LOC100129083 Gene

Promoters and enhancers for LOC100129083 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J051416 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 650.7 +1.7 1676 2.8 HDGF PKNOX1 EBF1 BATF KLF5 IRF4 FOSL1 POLR2A VEZF1 EED SIGLEC10 LOC100129083
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129083 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129083 gene promoter:
  • NRSF form 2
  • NRSF form 1
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • Nkx3-1
  • Nkx3-1 v1

Genomic Locations for LOC100129083 Gene

Genomic Locations for LOC100129083 Gene
chr19:51,415,724-51,417,425
(GRCh38/hg38)
Size:
1,702 bases
Orientation:
Plus strand
chr19:51,918,978-51,920,679
(GRCh37/hg19)
Size:
1,702 bases
Orientation:
Plus strand

Genomic View for LOC100129083 Gene

Genes around LOC100129083 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129083 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129083 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129083 Gene

Proteins for LOC100129083 Gene

Post-translational modifications for LOC100129083 Gene

No Post-translational modifications

Other Protein References for LOC100129083 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC100129083 Gene

Domains & Families for LOC100129083 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129083 Gene

Function for LOC100129083 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100129083

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129083 Gene

Localization for LOC100129083 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129083 Gene

Pathways & Interactions for LOC100129083 Gene

SuperPathways for LOC100129083 Gene

No Data Available

Interacting Proteins for LOC100129083 Gene

Gene Ontology (GO) - Biological Process for LOC100129083 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129083 Gene

Drugs & Compounds for LOC100129083 Gene

No Compound Related Data Available

Transcripts for LOC100129083 Gene

mRNA/cDNA for LOC100129083 Gene

(1) REFSEQ mRNAs :
(0) Additional mRNA sequences :
-
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC100129083 Gene

Uncharacterized LOC100129083:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100129083

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129083 Gene

No ASD Table

Relevant External Links for LOC100129083 Gene

GeneLoc Exon Structure for
LOC100129083

Expression for LOC100129083 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129083 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100129083 Gene

This gene is overexpressed in Whole Blood (x22.9) and Spleen (x6.9).

SOURCE GeneReport for Unigene cluster for LOC100129083 Gene:

Hs.724300
genes like me logo Genes that share expression patterns with LOC100129083: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129083 Gene

Orthologs for LOC100129083 Gene

Evolution for LOC100129083 Gene

ENSEMBL:
Gene Tree for LOC100129083 (if available)
TreeFam:
Gene Tree for LOC100129083 (if available)

No data available for Orthologs for LOC100129083 Gene

Paralogs for LOC100129083 Gene

No data available for Paralogs for LOC100129083 Gene

Variants for LOC100129083 Gene

Sequence variations from dbSNP and Humsavar for LOC100129083 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000801667 -- 51,416,022(+) G/A 5_prime_UTR_variant
rs1001757913 -- 51,417,140(+) C/T coding_sequence_variant, missense_variant
rs1001789132 -- 51,416,953(+) G/T intron_variant
rs1003306878 -- 51,417,886(+) G/A downstream_transcript_variant
rs1003307138 -- 51,414,761(+) CCC/CC upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100129083 Gene

Variant ID Type Subtype PubMed ID
nsv1140251 OTHER inversion 24896259

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100129083 Gene

Disorders for LOC100129083 Gene

Additional Disease Information for LOC100129083

No disorders were found for LOC100129083 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129083 Gene

Publications for LOC100129083 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for LOC100129083 Gene

Sources for LOC100129083 Gene

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