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Aliases for LOC100129046 Gene

Subcategory (RNA class) for LOC100129046 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100129046 Gene

  • Uncharacterized LOC100129046 3
  • AL109613.1 5

External Ids for LOC100129046 Gene

Previous GeneCards Identifiers for LOC100129046 Gene

  • GC01U902101
  • GC01P093830
  • GC01P094055

Summaries for LOC100129046 Gene

GeneCards Summary for LOC100129046 Gene

LOC100129046 (Uncharacterized LOC100129046) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129046 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129046 Gene

Genomics for LOC100129046 Gene

GeneHancer (GH) Regulatory Elements for LOC100129046 Gene

Promoters and enhancers for LOC100129046 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I093612 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE dbSUPER 12.6 +24.3 24338 8.3 FOXA2 MLX ZFP64 ARID4B FEZF1 DMAP1 IRF4 YY1 FOS SP5 BCAR3 LOC100129046 MIR760 GCLM CCDC18-AS1 GC01M093588 GC01M093613
GH01I093565 Enhancer 1.2 ENCODE dbSUPER 18.3 -25.0 -25041 3 HDGF PKNOX1 ATF1 ARNT TCF12 POLR2B ZNF766 CBX5 GATA2 E2F8 CCDC18-AS1 SNORA66 SNORD21 BCAR3 LOC100129046 RPL5 DR1 GC01M093557 GC01P093543 FNBP1L
GH01I093661 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.1 +76.0 76035 13.8 PKNOX1 SMAD1 FOXA2 ARNT SIN3A ZNF143 FOS MEF2D SMARCA4 GLIS1 CCDC18-AS1 DNTTIP2 SNORA66 LOC100129046 BCAR3 GCLM TMED5 EVI5 FNBP1L GC01M093613
GH01I093773 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11 +186.1 186138 9.5 NEUROD1 FEZF1 BRCA1 GLIS2 KLF7 FOS SP3 REST ZNF662 TSHZ1 MIG7 SNORA66 BCAR3 SNORD21 LOC100129046 RPL5 DNTTIP2 GCLM TRR-TCT1-1 ARHGAP29
GH01I093621 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.7 +32.3 32306 5.8 SAP130 JUN ZNF140 CEBPG FEZF1 RARA POLR2A CBFA2T2 RCOR1 ATF7 BCAR3 CCDC18-AS1 MTF2 SNORA66 MIR760 LOC100129046 GCLM DR1 GC01M093613 GC01M093588
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129046 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129046 gene promoter:

Genomic Locations for LOC100129046 Gene

Genomic Locations for LOC100129046 Gene
chr1:93,591,968-93,605,573
(GRCh38/hg38)
Size:
13,606 bases
Orientation:
Plus strand
chr1:94,057,525-94,071,130
(GRCh37/hg19)

Genomic View for LOC100129046 Gene

Genes around LOC100129046 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129046 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129046 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129046 Gene

Proteins for LOC100129046 Gene

Post-translational modifications for LOC100129046 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129046 Gene

Domains & Families for LOC100129046 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129046 Gene

Function for LOC100129046 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129046 Gene

Localization for LOC100129046 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129046 Gene

Pathways & Interactions for LOC100129046 Gene

SuperPathways for LOC100129046 Gene

No Data Available

Interacting Proteins for LOC100129046 Gene

Gene Ontology (GO) - Biological Process for LOC100129046 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129046 Gene

Drugs & Compounds for LOC100129046 Gene

No Compound Related Data Available

Transcripts for LOC100129046 Gene

mRNA/cDNA for LOC100129046 Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100129046 Gene

Uncharacterized LOC100129046:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129046 Gene

No ASD Table

Relevant External Links for LOC100129046 Gene

GeneLoc Exon Structure for
LOC100129046

Expression for LOC100129046 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129046 Gene

SOURCE GeneReport for Unigene cluster for LOC100129046 Gene:

Hs.729244
genes like me logo Genes that share expression patterns with LOC100129046: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129046 Gene

Orthologs for LOC100129046 Gene

Evolution for LOC100129046 Gene

ENSEMBL:
Gene Tree for LOC100129046 (if available)
TreeFam:
Gene Tree for LOC100129046 (if available)

No data available for Orthologs for LOC100129046 Gene

Paralogs for LOC100129046 Gene

No data available for Paralogs for LOC100129046 Gene

Variants for LOC100129046 Gene

Sequence variations from dbSNP and Humsavar for LOC100129046 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000144832 -- 93,596,170(+) T/C intron_variant
rs1000245174 -- 93,596,595(+) C/A intron_variant
rs1000398363 -- 93,598,975(+) C/T non_coding_transcript_variant
rs1000462856 -- 93,593,369(+) A/ intron_variant
rs1000578292 -- 93,593,101(+) T/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129046 Gene

Disorders for LOC100129046 Gene

Additional Disease Information for LOC100129046

No disorders were found for LOC100129046 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129046 Gene

Publications for LOC100129046 Gene

No publications were found for LOC100129046 Gene.

Products for LOC100129046 Gene

Sources for LOC100129046 Gene

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