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Aliases for LOC100129027 Gene

Subcategory (RNA class) for LOC100129027 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100129027 Gene

  • Uncharacterized LOC100129027 3
  • AL592528.1 5

External Ids for LOC100129027 Gene

Previous GeneCards Identifiers for LOC100129027 Gene

  • GC21M046074
  • GC21M047248

Summaries for LOC100129027 Gene

GeneCards Summary for LOC100129027 Gene

LOC100129027 (Uncharacterized LOC100129027) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129027 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129027 Gene

Genomics for LOC100129027 Gene

GeneHancer (GH) Regulatory Elements for LOC100129027 Gene

Promoters and enhancers for LOC100129027 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21I045548 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +283.4 283359 8.9 HDGF PKNOX1 CLOCK SMAD1 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B MCM3AP ENSG00000228137 UBE2G2 POFUT2 DIP2A ENSG00000227438 COL6A1 SLC19A1 COL6A2 MCM3AP-AS1
GH21I045589 Enhancer 1.6 FANTOM5 Ensembl ENCODE 11.1 +245.0 244975 3.5 HDGF PKNOX1 ARNT YBX1 ZNF2 ZBTB7B POLR2B ZNF207 ZNF143 ZNF548 LINC01694 ENSG00000228137 MCM3AP DIP2A MCM3AP-AS1 UBE2G2 POFUT2 COL6A1 ENSG00000215447 ENSG00000227438
GH21I046048 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.3 -222.1 -222110 19.8 ZNF473 ZSCAN4 INSM2 KLF17 RAD21 ETS1 CBX5 ZNF350 ZNF548 FOS ENSG00000228137 DIP2A MCM3AP MCM3AP-AS1 COL6A1 POFUT2 ENSG00000215447 DSTNP1 LINC00205 ENSG00000227438
GH21I045618 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.4 +217.9 217931 0.6 NFIB ZNF529 INSM2 KLF17 ZNF76 ZNF335 GLIS2 ZNF366 ZNF350 ZNF662 DIP2A ENSG00000228137 MCM3AP-AS1 PCBP3 MCM3AP ENSG00000215447 LINC00205 COL6A1 UBE2G2 ENSG00000239415
GH21I045880 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.3 -44.4 -44352 1.5 CTCF CLOCK USF1 RB1 MAX SIN3A EBF1 ZNF48 RAD21 GLIS2 PCBP3 LOC100129027 COL6A1 ENSG00000276633 ENSG00000280604 GC21P045744
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129027 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129027 gene promoter:

Genomic Locations for LOC100129027 Gene

Genomic Locations for LOC100129027 Gene
chr21:45,827,841-45,836,419
(GRCh38/hg38)
Size:
8,579 bases
Orientation:
Minus strand
chr21:47,247,755-47,256,333
(GRCh37/hg19)

Genomic View for LOC100129027 Gene

Genes around LOC100129027 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129027 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129027 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129027 Gene

Proteins for LOC100129027 Gene

Post-translational modifications for LOC100129027 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129027 Gene

Domains & Families for LOC100129027 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129027 Gene

Function for LOC100129027 Gene

Phenotypes From GWAS Catalog for LOC100129027 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129027 Gene

Localization for LOC100129027 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129027 Gene

Pathways & Interactions for LOC100129027 Gene

SuperPathways for LOC100129027 Gene

No Data Available

Interacting Proteins for LOC100129027 Gene

Gene Ontology (GO) - Biological Process for LOC100129027 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129027 Gene

Drugs & Compounds for LOC100129027 Gene

No Compound Related Data Available

Transcripts for LOC100129027 Gene

mRNA/cDNA for LOC100129027 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100129027 Gene

Uncharacterized LOC100129027:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129027 Gene

No ASD Table

Relevant External Links for LOC100129027 Gene

GeneLoc Exon Structure for
LOC100129027

Expression for LOC100129027 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129027 Gene

SOURCE GeneReport for Unigene cluster for LOC100129027 Gene:

Hs.689591
genes like me logo Genes that share expression patterns with LOC100129027: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129027 Gene

Orthologs for LOC100129027 Gene

Evolution for LOC100129027 Gene

ENSEMBL:
Gene Tree for LOC100129027 (if available)
TreeFam:
Gene Tree for LOC100129027 (if available)

No data available for Orthologs for LOC100129027 Gene

Paralogs for LOC100129027 Gene

No data available for Paralogs for LOC100129027 Gene

Variants for LOC100129027 Gene

Sequence variations from dbSNP and Humsavar for LOC100129027 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000351395 -- 45,837,260(-) A/G upstream_transcript_variant
rs1000405113 -- 45,829,050(-) C/T non_coding_transcript_variant
rs1000508193 -- 45,828,659(-) G/A non_coding_transcript_variant
rs1000524346 -- 45,833,993(-) G/A intron_variant
rs1001250677 -- 45,831,657(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100129027 Gene

Variant ID Type Subtype PubMed ID
esv2758821 CNV loss 17122850
nsv509803 CNV insertion 20534489

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100129027 Gene

Disorders for LOC100129027 Gene

Additional Disease Information for LOC100129027

No disorders were found for LOC100129027 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129027 Gene

Publications for LOC100129027 Gene

  1. Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (PMID: 22610502) Kennedy RB … Poland GA (Human genetics 2012) 3 58

Products for LOC100129027 Gene

Sources for LOC100129027 Gene

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