Aliases for LOC100128993 Gene

Data sources for LOC100128993 Gene:

Subcategory (RNA class) for LOC100128993 Gene

lncRNA

Aliases for LOC100128993 Gene

External Ids for LOC100128993 Gene

Previous GeneCards Identifiers for LOC100128993 Gene

  • GC08U900993
  • GC08M019086
  • GC08M019183

Summaries for LOC100128993 Gene

GeneCards Summary for LOC100128993 Gene

LOC100128993 (Uncharacterized LOC100128993) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100128993 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100128993 Gene

Genomics for LOC100128993 Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around LOC100128993 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100128993 gene promoter:
  • ATF-2
  • C/EBPalpha
  • COMP1
  • Evi-1
  • FOXJ2
  • FOXJ2 (long isoform)
  • LHX3b
  • LyF-1
  • Nkx6-1
  • RORalpha2

Genomic Locations for LOC100128993 Gene

Latest Assembly
chr8:19,084,992-19,259,469
(GRCh38/hg38)
Size:
174,478 bases
Orientation:
Minus strand

Previous Assembly
chr8:19,041,184-19,103,032
(GRCh37/hg19 by Entrez Gene)
Size:
61,849 bases
Orientation:
Minus strand

Genomic View for LOC100128993 Gene

Genes around LOC100128993 on UCSC Golden Path with GeneCards custom track
LOC100128993 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100128993 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128993 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128993 Gene

Proteins for LOC100128993 Gene

Post-translational modifications for LOC100128993 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128993 Gene

Domains & Families for LOC100128993 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100128993 Gene

Function for LOC100128993 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128993 Gene

Localization for LOC100128993 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128993 Gene

Pathways & Interactions for LOC100128993 Gene

PathCards logo

SuperPathways for LOC100128993 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100128993 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100128993 Gene

Drugs & Compounds for LOC100128993 Gene

No Compound Related Data Available

Transcripts for LOC100128993 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100128993 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E126_9606 lncRNA 1018 2

RefSeq: NR_038919,

LNCipedia: lnc-PSD3-1:12,

URS00008BF669_9606 lncRNA 1011 3

LncBook: HSALNT0133726,

LNCipedia: lnc-PSD3-1:5,

NONCODE: NONHSAT125362.2,

URS00008C0638_9606 lncRNA 826 3

LncBook: HSALNT0133723,

LNCipedia: lnc-PSD3-1:10,

NONCODE: NONHSAT125360.2,

URS00008B33E8_9606 lncRNA 785 3

LncBook: HSALNT0133728,

LNCipedia: lnc-PSD3-1:8,

NONCODE: NONHSAT125364.2,

URS00008BB08E_9606 lncRNA 681 3

LncBook: HSALNT0133733,

LNCipedia: lnc-PSD3-1:4,

NONCODE: NONHSAT125368.2,

LOC100128993 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100128993 Gene

4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128993 Gene

No ASD Table

Relevant External Links for LOC100128993 Gene

GeneLoc Exon Structure for
LOC100128993

Expression for LOC100128993 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100128993 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100128993

SOURCE GeneReport for Unigene cluster for LOC100128993 Gene:

Hs.697742
genes like me logo Genes that share expression patterns with LOC100128993: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128993 Gene

Orthologs for LOC100128993 Gene

No data available for Orthologs and Evolution for LOC100128993 Gene

Paralogs for LOC100128993 Gene

No data available for Paralogs for LOC100128993 Gene

Variants for LOC100128993 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100128993 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100128993 Gene

Variant ID Type Subtype PubMed ID
dgv1200e201 CNV deletion 23290073
dgv1386e214 CNV loss 21293372
esv1074859 CNV deletion 17803354
esv1958427 CNV deletion 18987734
esv23258 CNV gain 19812545
esv2589784 CNV deletion 19546169
esv2664164 CNV deletion 23128226
esv2736710 CNV deletion 23290073
esv2736711 CNV deletion 23290073
esv2736712 CNV deletion 23290073
esv2736714 CNV deletion 23290073
esv3543174 CNV deletion 23714750
esv3616532 CNV gain 21293372
esv3891368 CNV gain+loss 25118596
esv3891369 CNV gain 25118596
esv988210 CNV deletion 20482838
nsv1016482 CNV gain 25217958
nsv1027885 CNV gain 25217958
nsv1033377 CNV gain 25217958
nsv1073375 CNV deletion 25765185
nsv1115074 CNV deletion 24896259
nsv522185 CNV gain 19592680
nsv6102 CNV deletion 18451855
nsv956056 CNV deletion 24416366

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100128993 Gene

Disorders for LOC100128993 Gene

No disorders were found for LOC100128993 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100128993 Gene

Publications for LOC100128993 Gene

  1. Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries. (PMID: 24556642) Zeng Z … Shaffer JR (Caries research 2014) 3
  2. Genome wide association and linkage analyses identified three loci-4q25, 17q23.2, and 10q11.21-associated with variation in leukocyte telomere length: the Long Life Family Study. (PMID: 24478790) Lee JH … Mayeux R (Frontiers in genetics 2013) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LOC100128993 Gene

Products for LOC100128993 Gene

Sources for LOC100128993 Gene