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Aliases for LOC100128993 Gene

Subcategory (RNA class) for LOC100128993 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100128993 Gene

  • Uncharacterized LOC100128993 3

External Ids for LOC100128993 Gene

Previous GeneCards Identifiers for LOC100128993 Gene

  • GC08U900993

Summaries for LOC100128993 Gene

GeneCards Summary for LOC100128993 Gene

LOC100128993 (Uncharacterized LOC100128993) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128993 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128993 Gene

Genomics for LOC100128993 Gene

GeneHancer (GH) Regulatory Elements for LOC100128993 Gene

Promoters and enhancers for LOC100128993 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J019208 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +35.8 35810 2.2 MXI1 JUN MAX BRCA1 HIC1 ZNF324 ZNF366 POLR2A SCRT2 FOSL2 SH2D4A GC08P019197 LOC442382 LOC100128993 ENSG00000253557
GH08J019228 Enhancer 1.1 ENCODE dbSUPER 0.4 +16.9 16876 0.2 ELF3 FOXA2 MLX ARID4B DMAP1 RAD21 DNMT3B ZSCAN9 RARA THAP11 LOC442382 LOC100128993 ENSG00000253557 GC08P019197
GH08J019200 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +44.5 44494 1.3 JUND JUN FOS PSD3 SH2D4A ENSG00000271654 GC08P019197 LOC442382 LOC100128993 ENSG00000253557
GH08J019227 Enhancer 0.7 ENCODE dbSUPER 0.4 +17.7 17711 0.9 CTCF MAX SMC3 RAD21 NR2F2 SH2D4A LOC442382 LOC100128993 GC08P019197 ENSG00000253557
GH08J019216 Enhancer 0.8 FANTOM5 Ensembl dbSUPER 0.3 +28.5 28521 1.2 HLF SH2D4A GC08P019197 LOC442382 LOC100128993 ENSG00000253557
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128993 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128993 gene promoter:
  • FOXJ2 (long isoform)
  • FOXJ2
  • Evi-1
  • ATF-2
  • LyF-1
  • C/EBPalpha
  • COMP1
  • RORalpha2
  • Nkx6-1
  • LHX3b

Genomic Locations for LOC100128993 Gene

Genomic Locations for LOC100128993 Gene
chr8:19,183,674-19,245,522
(GRCh38/hg38)
Size:
61,849 bases
Orientation:
Minus strand

Genomic View for LOC100128993 Gene

Genes around LOC100128993 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128993 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128993 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128993 Gene

Proteins for LOC100128993 Gene

Post-translational modifications for LOC100128993 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128993 Gene

Domains & Families for LOC100128993 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128993 Gene

Function for LOC100128993 Gene

Phenotypes From GWAS Catalog for LOC100128993 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128993 Gene

Localization for LOC100128993 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128993 Gene

Pathways & Interactions for LOC100128993 Gene

SuperPathways for LOC100128993 Gene

No Data Available

Interacting Proteins for LOC100128993 Gene

Gene Ontology (GO) - Biological Process for LOC100128993 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128993 Gene

Drugs & Compounds for LOC100128993 Gene

No Compound Related Data Available

Transcripts for LOC100128993 Gene

mRNA/cDNA for LOC100128993 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for LOC100128993 Gene

Uncharacterized LOC100128993:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128993 Gene

No ASD Table

Relevant External Links for LOC100128993 Gene

GeneLoc Exon Structure for
LOC100128993

Expression for LOC100128993 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128993 Gene

SOURCE GeneReport for Unigene cluster for LOC100128993 Gene:

Hs.697742
genes like me logo Genes that share expression patterns with LOC100128993: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128993 Gene

Orthologs for LOC100128993 Gene

No data available for Orthologs and Evolution for LOC100128993 Gene

Paralogs for LOC100128993 Gene

No data available for Paralogs for LOC100128993 Gene

Variants for LOC100128993 Gene

Sequence variations from dbSNP and Humsavar for LOC100128993 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000067394 -- 19,230,865(-) C/T intron_variant
rs1000068309 -- 19,232,734(-) C/A intron_variant
rs1000143964 -- 19,236,856(-) G/A/C intron_variant
rs1000163938 -- 19,244,348(-) T/C intron_variant
rs1000183655 -- 19,237,052(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100128993 Gene

Variant ID Type Subtype PubMed ID
nsv956056 CNV deletion 24416366
nsv6102 CNV deletion 18451855
nsv522185 CNV gain 19592680
nsv1115074 CNV deletion 24896259
nsv1073375 CNV deletion 25765185
nsv1033377 CNV gain 25217958
nsv1027885 CNV gain 25217958
nsv1016482 CNV gain 25217958
esv988210 CNV deletion 20482838
esv3891369 CNV gain 25118596
esv3891368 CNV gain+loss 25118596
esv3616532 CNV gain 21293372
esv3543174 CNV deletion 23714750
esv2736714 CNV deletion 23290073
esv2736712 CNV deletion 23290073
esv2736711 CNV deletion 23290073
esv2736710 CNV deletion 23290073
esv2664164 CNV deletion 23128226
esv2589784 CNV deletion 19546169
esv23258 CNV gain 19812545
esv1958427 CNV deletion 18987734
esv1074859 CNV deletion 17803354
dgv1386e214 CNV loss 21293372
dgv1200e201 CNV deletion 23290073

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100128993 Gene

Disorders for LOC100128993 Gene

Additional Disease Information for LOC100128993

No disorders were found for LOC100128993 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128993 Gene

Publications for LOC100128993 Gene

  1. Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries. (PMID: 24556642) Zeng Z … Shaffer JR (Caries research 2014) 3 58
  2. Genome wide association and linkage analyses identified three loci-4q25, 17q23.2, and 10q11.21-associated with variation in leukocyte telomere length: the Long Life Family Study. (PMID: 24478790) Lee JH … Mayeux R (Frontiers in genetics 2013) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LOC100128993 Gene

Sources for LOC100128993 Gene

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