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Aliases for LOC100128988 Gene

Subcategory (RNA class) for LOC100128988 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC100128988 Gene

  • Uncharacterized LOC100128988 3

External Ids for LOC100128988 Gene

Previous GeneCards Identifiers for LOC100128988 Gene

  • GC20U900340
  • GC20P039042
  • GC20P039612

Summaries for LOC100128988 Gene

GeneCards Summary for LOC100128988 Gene

LOC100128988 (Uncharacterized LOC100128988) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128988 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128988 Gene

Genomics for LOC100128988 Gene

GeneHancer (GH) Regulatory Elements for LOC100128988 Gene

Promoters and enhancers for LOC100128988 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I040980 Enhancer 0.7 ENCODE 550.8 +0.7 717 1.3 PKNOX1 RB1 EBF1 BATF ZNF644 RELA ATF7 ETV6 BCLAF1 IKZF2 GC20M040979 LOC100128988 RNU2-52P TOP1 LOC105372621
GH20I040978 Enhancer 0.2 ENCODE 550.8 -1.0 -1023 1.1 GC20M040979 LOC100128988 TOP1 MAFB GC20P040950
GH20I040990 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.3 11348 2.4 HDGF PKNOX1 FOXA2 ARID4B SIN3A DMAP1 IRF4 ZNF48 ARID2 ZNF143 TOP1 MAFB RNU2-52P LOC100128988 LOC105372621
GH20I040981 Enhancer 0.7 ENCODE 0.8 +2.5 2499 1.4 BACH1 EBF1 BATF IRF4 ZNF316 FOXK2 SCRT2 ATF7 NFE2 ETV6 TOP1 RNU2-52P LOC100128988 LOC105372621
GH20I041001 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +25.9 25902 9.1 CLOCK MLX YBX1 FEZF1 DMAP1 SLC30A9 ZNF143 NFYC MEF2D SSRP1 LOC105372621 CHD6 PLCG1 MAFB TOP1 PLCG1-AS1 LPIN3 EMILIN3 GC20M041019 LOC100128988
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128988 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100128988 Gene

Genomic Locations for LOC100128988 Gene
chr20:40,980,037-41,024,521
(GRCh38/hg38)
Size:
44,485 bases
Orientation:
Plus strand
chr20:39,609,426-39,654,036
(GRCh37/hg19)

Genomic View for LOC100128988 Gene

Genes around LOC100128988 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128988 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128988 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128988 Gene

Proteins for LOC100128988 Gene

Post-translational modifications for LOC100128988 Gene

No Post-translational modifications

Other Protein References for LOC100128988 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC100128988 Gene

Domains & Families for LOC100128988 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128988 Gene

Function for LOC100128988 Gene

Phenotypes From GWAS Catalog for LOC100128988 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128988 Gene

Localization for LOC100128988 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128988 Gene

Pathways & Interactions for LOC100128988 Gene

SuperPathways for LOC100128988 Gene

No Data Available

Interacting Proteins for LOC100128988 Gene

Gene Ontology (GO) - Biological Process for LOC100128988 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128988 Gene

Drugs & Compounds for LOC100128988 Gene

No Compound Related Data Available

Transcripts for LOC100128988 Gene

mRNA/cDNA for LOC100128988 Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :

Unigene Clusters for LOC100128988 Gene

Uncharacterized LOC100128988:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128988 Gene

No ASD Table

Relevant External Links for LOC100128988 Gene

GeneLoc Exon Structure for
LOC100128988

Expression for LOC100128988 Gene

SOURCE GeneReport for Unigene cluster for LOC100128988 Gene:

Hs.736039
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128988 Gene

Orthologs for LOC100128988 Gene

No data available for Orthologs and Evolution for LOC100128988 Gene

Paralogs for LOC100128988 Gene

No data available for Paralogs for LOC100128988 Gene

Variants for LOC100128988 Gene

Sequence variations from dbSNP and Humsavar for LOC100128988 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000202490 -- 40,985,073(+) T/C intron_variant
rs1000275460 -- 41,008,806(+) T/C intron_variant
rs1000285590 -- 40,993,438(+) A/G intron_variant
rs1000286772 -- 41,000,283(+) T/C intron_variant
rs1000323823 -- 40,979,670(+) A/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128988 Gene

Disorders for LOC100128988 Gene

Additional Disease Information for LOC100128988

No disorders were found for LOC100128988 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128988 Gene

Publications for LOC100128988 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100128988 Gene

Sources for LOC100128988 Gene

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