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Aliases for LOC100128966 Gene

Subcategory (RNA class) for LOC100128966 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC100128966 Gene

  • Uncharacterized LOC100128966 3

External Ids for LOC100128966 Gene

Previous GeneCards Identifiers for LOC100128966 Gene

  • GC05U900955
  • GC05P137697

Summaries for LOC100128966 Gene

GeneCards Summary for LOC100128966 Gene

LOC100128966 (Uncharacterized LOC100128966) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128966 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128966 Gene

Genomics for LOC100128966 Gene

GeneHancer (GH) Regulatory Elements for LOC100128966 Gene

Promoters and enhancers for LOC100128966 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I138330 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 -0.5 -495 2.1 HDGF PKNOX1 SMAD1 FOXA2 ARID4B SIN3A YBX1 DMAP1 ZNF2 YY1 FAM53C LOC100128966 CDC25C HNRNPA0 KDM3B GFRA3 LOC105379194 GC05P138279 GC05M138244
GH05I138335 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 +5.5 5485 5 CLOCK ZFP64 FEZF1 DMAP1 YBX1 IRF4 YY1 ZNF213 E2F8 ZNF143 CDC25C FAM53C HNRNPA0 KDM3B RPL7P19 CDC23 REEP2 MATR3 NME5 SPOCK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128966 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100128966 Gene

Genomic Locations for LOC100128966 Gene
chr5:138,332,055-138,336,085
(GRCh38/hg38)
Size:
4,031 bases
Orientation:
Plus strand

Genomic View for LOC100128966 Gene

Genes around LOC100128966 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128966 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128966 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128966 Gene

Proteins for LOC100128966 Gene

Post-translational modifications for LOC100128966 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128966 Gene

Domains & Families for LOC100128966 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128966 Gene

Function for LOC100128966 Gene

Phenotypes From GWAS Catalog for LOC100128966 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128966 Gene

Localization for LOC100128966 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128966 Gene

Pathways & Interactions for LOC100128966 Gene

SuperPathways for LOC100128966 Gene

No Data Available

Interacting Proteins for LOC100128966 Gene

Gene Ontology (GO) - Biological Process for LOC100128966 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128966 Gene

Drugs & Compounds for LOC100128966 Gene

No Compound Related Data Available

Transcripts for LOC100128966 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128966 Gene

No ASD Table

Relevant External Links for LOC100128966 Gene

GeneLoc Exon Structure for
LOC100128966

No data available for mRNA/cDNA for LOC100128966 Gene

Expression for LOC100128966 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128966 Gene

Orthologs for LOC100128966 Gene

No data available for Orthologs and Evolution for LOC100128966 Gene

Paralogs for LOC100128966 Gene

No data available for Paralogs for LOC100128966 Gene

Variants for LOC100128966 Gene

Sequence variations from dbSNP and Humsavar for LOC100128966 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000805979 -- 138,331,799(+) AAGAA/AA upstream_transcript_variant
rs1000898127 -- 138,331,363(+) T/C upstream_transcript_variant
rs1001900544 -- 138,330,259(+) C/T upstream_transcript_variant
rs1002347538 -- 138,331,301(+) A/G upstream_transcript_variant
rs1002807402 -- 138,334,392(+) T/A downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128966 Gene

Disorders for LOC100128966 Gene

Additional Disease Information for LOC100128966

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LOC100128966 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128966 Gene

Publications for LOC100128966 Gene

  1. Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis. (PMID: 19240791) Graubert TA … Walter MJ (PloS one 2009) 3 44 58

Products for LOC100128966 Gene

Sources for LOC100128966 Gene

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