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Aliases for LOC100128885 Gene

Subcategory (RNA class) for LOC100128885 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100128885 Gene

  • Uncharacterized LOC100128885 3

External Ids for LOC100128885 Gene

Previous GeneCards Identifiers for LOC100128885 Gene

  • GC07U902470
  • GC07P063713
  • GC07P064075

Summaries for LOC100128885 Gene

GeneCards Summary for LOC100128885 Gene

LOC100128885 (Uncharacterized LOC100128885) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128885 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128885 Gene

Genomics for LOC100128885 Gene

GeneHancer (GH) Regulatory Elements for LOC100128885 Gene

Promoters and enhancers for LOC100128885 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J064574 Enhancer 0.5 Ensembl ENCODE 650.7 0.0 -40 1.1 POLR2A LOC100128885 ZNF680P1 ZNF138 LOC100129293
GH07J064581 Enhancer 0.6 ENCODE 0.4 +7.6 7608 0.7 RNF2 TEAD4 TAL1 CBFA2T3 EP300 TCF12 NFIC GATA2 NCOR1 IKZF1 LOC641746 ZNF736 LOC100128885
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128885 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100128885 Gene

Genomic Locations for LOC100128885 Gene
chr7:64,574,695-64,618,589
(GRCh38/hg38)
Size:
43,895 bases
Orientation:
Plus strand

Genomic View for LOC100128885 Gene

Genes around LOC100128885 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128885 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128885 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128885 Gene

Proteins for LOC100128885 Gene

Post-translational modifications for LOC100128885 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128885 Gene

Domains & Families for LOC100128885 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128885 Gene

Function for LOC100128885 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128885 Gene

Localization for LOC100128885 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128885 Gene

Pathways & Interactions for LOC100128885 Gene

SuperPathways for LOC100128885 Gene

No Data Available

Interacting Proteins for LOC100128885 Gene

Gene Ontology (GO) - Biological Process for LOC100128885 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128885 Gene

Drugs & Compounds for LOC100128885 Gene

No Compound Related Data Available

Transcripts for LOC100128885 Gene

mRNA/cDNA for LOC100128885 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for LOC100128885 Gene

Uncharacterized LOC100128885:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128885 Gene

No ASD Table

Relevant External Links for LOC100128885 Gene

GeneLoc Exon Structure for
LOC100128885

Expression for LOC100128885 Gene

SOURCE GeneReport for Unigene cluster for LOC100128885 Gene:

Hs.586332
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128885 Gene

Orthologs for LOC100128885 Gene

No data available for Orthologs and Evolution for LOC100128885 Gene

Paralogs for LOC100128885 Gene

No data available for Paralogs for LOC100128885 Gene

Variants for LOC100128885 Gene

Sequence variations from dbSNP and Humsavar for LOC100128885 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000015668 -- 64,617,583(+) G/A non_coding_transcript_variant
rs1000015990 -- 64,602,120(+) G/A intron_variant
rs1000121998 -- 64,573,639(+) T/C upstream_transcript_variant
rs1000129797 -- 64,617,224(+) G/A non_coding_transcript_variant
rs1000170102 -- 64,601,789(+) A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100128885 Gene

Variant ID Type Subtype PubMed ID
nsv970503 CNV duplication 23825009
nsv607312 CNV gain 21841781
nsv464518 CNV gain 19166990
nsv1027615 CNV gain 25217958
nsv1018445 CNV gain 25217958
esv3613419 CNV loss 21293372
esv2764000 CNV gain+loss 21179565
esv2422405 CNV duplication 17116639
esv23182 CNV gain 19812545
dgv1099e201 CNV deletion 23290073

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100128885 Gene

Disorders for LOC100128885 Gene

Additional Disease Information for LOC100128885

No disorders were found for LOC100128885 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128885 Gene

Publications for LOC100128885 Gene

  1. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 3 58

Products for LOC100128885 Gene

Sources for LOC100128885 Gene

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