Aliases for LOC100128882 Gene

Subcategory (RNA class) for LOC100128882 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC100128882 Gene

  • Uncharacterized LOC100128882 3
  • Novel Transcript, Antisense To ZFPM1 5
  • NONHSAG020285.2 91
  • AC116552.1 5
  • Lnc-CYBA-5 165

External Ids for LOC100128882 Gene

Previous GeneCards Identifiers for LOC100128882 Gene

  • GC16U900694
  • GC16M087106

Summaries for LOC100128882 Gene

GeneCards Summary for LOC100128882 Gene

LOC100128882 (Uncharacterized LOC100128882) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100128882 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100128882 Gene

Genomics for LOC100128882 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100128882 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100128882 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100128882 Gene

Genomic Locations for LOC100128882 Gene
chr16:88,512,959-88,531,053
(GRCh38/hg38)
Size:
18,095 bases
Orientation:
Minus strand
chr16:88,579,368-88,597,461
(GRCh37/hg19)
Size:
18,094 bases
Orientation:
Minus strand

Genomic View for LOC100128882 Gene

Genes around LOC100128882 on UCSC Golden Path with GeneCards custom track
LOC100128882 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100128882 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128882 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128882 Gene

Proteins for LOC100128882 Gene

Post-translational modifications for LOC100128882 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128882 Gene

Domains & Families for LOC100128882 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100128882 Gene

Function for LOC100128882 Gene

Phenotypes From GWAS Catalog for LOC100128882 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128882 Gene

Localization for LOC100128882 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128882 Gene

Pathways & Interactions for LOC100128882 Gene

PathCards logo

SuperPathways for LOC100128882 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100128882 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100128882 Gene

Drugs & Compounds for LOC100128882 Gene

No Compound Related Data Available

Transcripts for LOC100128882 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100128882 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000FEBAB_9606 lncRNA 733 3

Ensembl: ENST00000563243 (view in UCSC) ,

LNCipedia: lnc-CYBA-5:1,

NONCODE: NONHSAT144385.2,

URS0000BC44BE_9606 lncRNA 734 1

RefSeq: NR_148997,

LOC100128882 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100128882 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128882 Gene

No ASD Table

Relevant External Links for LOC100128882 Gene

GeneLoc Exon Structure for
LOC100128882

Expression for LOC100128882 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100128882 Gene

genes like me logo Genes that share expression patterns with LOC100128882: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128882 Gene

Orthologs for LOC100128882 Gene

Evolution for LOC100128882 Gene

ENSEMBL:
Gene Tree for LOC100128882 (if available)
TreeFam:
Gene Tree for LOC100128882 (if available)

No data available for Orthologs for LOC100128882 Gene

Paralogs for LOC100128882 Gene

No data available for Paralogs for LOC100128882 Gene

Variants for LOC100128882 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC100128882 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
786298 Benign: not provided 88,526,888(-) C/T SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for LOC100128882 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128882 Gene

Disorders for LOC100128882 Gene

No disorders were found for LOC100128882 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100128882 Gene

Publications for LOC100128882 Gene

No publications were found for LOC100128882 Gene.

No data available for Mastermind for LOC100128882 Gene

Products for LOC100128882 Gene

Sources for LOC100128882 Gene