Aliases for LOC100128882 Gene

Subcategory (RNA class) for LOC100128882 Gene

lncRNA

Quality Score for this RNA gene is

11

Aliases for LOC100128882 Gene

  • Uncharacterized LOC100128882 3

External Ids for LOC100128882 Gene

Previous GeneCards Identifiers for LOC100128882 Gene

  • GC16U900694
  • GC16M087106

Summaries for LOC100128882 Gene

GeneCards Summary for LOC100128882 Gene

LOC100128882 (Uncharacterized LOC100128882) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100128882 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100128882 Gene

Genomics for LOC100128882 Gene

GeneHancer (GH) Regulatory Elements for LOC100128882 Gene

Promoters and enhancers for LOC100128882 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J088532 Promoter/Enhancer 1.4 ENCODE CraniofacialAtlas dbSUPER 750.6 -1.9 -1935 3.5 ZNF24 POLR2A ETV6 MNT NKRF ELF1 ZNF687 GLIS2 ZIC2 BACH1 LOC100128882 ENSG00000261744 RF00017-2191 ZFPM1
GH16J088529 Enhancer 0.9 ENCODE dbSUPER 750.6 +1.5 1521 2.8 ZFX CBFA2T2 SMARCA4 MTA1 REST PATZ1 HDAC1 ZNF316 LEF1 POLR2A ENSG00000261744 LOC100128882 lnc-CYBA-3 ZFPM1
GH16J088523 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +6.1 6080 5 CTCF MLX RBPJ MIXL1 CC2D1A L3MBTL2 DACH1 RAD21 ZNF121 TEAD4 ZC3H18 APRT ENSG00000261744 ANKRD11 ENSG00000260121 ZFPM1 ENSG00000268218 LINC00304 ZNF469 PIEZO1
GH16J088511 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 +18.8 18843 2.7 GLIS2 RFX1 BMI1 RCOR1 PAF1 ENSG00000261744 ZC3H18 BANP ENSG00000261118 ANKRD11 LOC100128882 lnc-CYBA-3 ZFPM1
GH16J088515 Enhancer 0.7 ENCODE dbSUPER 0.4 +15.9 15886 1.7 ZNF24 ZIC2 NR2F2 BCOR ADNP ZMYM3 ZBTB33 KDM1A ZFPM1 ZC3H18 SLC22A31 ENSG00000261744 LOC100128882 lnc-CYBA-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100128882 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100128882 Gene

Genomic Locations for LOC100128882 Gene
chr16:88,512,836-88,531,995
(GRCh38/hg38)
Size:
19,160 bases
Orientation:
Minus strand

Genomic View for LOC100128882 Gene

Genes around LOC100128882 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128882 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128882 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128882 Gene

Proteins for LOC100128882 Gene

Post-translational modifications for LOC100128882 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128882 Gene

Domains & Families for LOC100128882 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100128882 Gene

Function for LOC100128882 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128882 Gene

Localization for LOC100128882 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128882 Gene

Pathways & Interactions for LOC100128882 Gene

PathCards logo

SuperPathways for LOC100128882 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100128882 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128882 Gene

Drugs & Compounds for LOC100128882 Gene

No Compound Related Data Available

Transcripts for LOC100128882 Gene

mRNA/cDNA for LOC100128882 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) RNACentral transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128882 Gene

No ASD Table

Relevant External Links for LOC100128882 Gene

GeneLoc Exon Structure for
LOC100128882

Expression for LOC100128882 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128882 Gene

genes like me logo Genes that share expression patterns with LOC100128882: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128882 Gene

Orthologs for LOC100128882 Gene

No data available for Orthologs and Evolution for LOC100128882 Gene

Paralogs for LOC100128882 Gene

No data available for Paralogs for LOC100128882 Gene

Variants for LOC100128882 Gene

Sequence variations from dbSNP and Humsavar for LOC100128882 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000014011 -- 88,518,097(-) C/T intron_variant
rs1000251316 -- 88,525,133(-) G/A intron_variant
rs1000266589 -- 88,523,374(-) G/A intron_variant
rs1000292131 -- 88,513,471(-) G/A intron_variant
rs1000427612 -- 88,521,488(-) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128882 Gene

Disorders for LOC100128882 Gene

No disorders were found for LOC100128882 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100128882 Gene

Publications for LOC100128882 Gene

No publications were found for LOC100128882 Gene.

No data available for External Links for LOC100128882 Gene

Products for LOC100128882 Gene

Sources for LOC100128882 Gene