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LOC100128882 Gene(RNA Gene)

Uncharacterized LOC100128882

GCID:
GC16M088512
GIFtS:
7
Genes Participants
UDN Logo

Aliases for LOC100128882 Gene

Subcategory (RNA class) for LOC100128882 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100128882 Gene

  • Uncharacterized LOC100128882 3
  • AC116552.1 5

External Ids for LOC100128882 Gene

Previous GeneCards Identifiers for LOC100128882 Gene

  • GC16U900694
  • GC16M087106

Summaries for LOC100128882 Gene

GeneCards Summary for LOC100128882 Gene

LOC100128882 (Uncharacterized LOC100128882) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128882 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128882 Gene

Genomics for LOC100128882 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LOC100128882 Gene

Promoters and enhancers for LOC100128882 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16I088529 Enhancer 1.3 Ensembl ENCODE dbSUPER 571.4 -0.4 -432 6.7 HDAC1 CLOCK SMAD1 RB1 SIN3A TCF12 ZNF766 GLIS2 ELK1 ZNF143 LOC100128882 ZC3H18-AS1 ZFPM1
GH16I088524 Enhancer 1.4 Ensembl ENCODE dbSUPER 18.2 +5.6 5552 4 HDGF ATF1 ARID4B ZNF48 ZNF121 GLIS2 GATA2 ARID2 ZNF143 ATF7 LOC100128882 ZFPM1 ZC3H18 ZNF469 SNAI3-AS1 GALNS MIR5189
GH16I088502 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.4 +25.1 25110 9 PKNOX1 FOXA2 MLX ZFP64 ARID4B FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ENSG00000259877 LOC101927863 SPG7 ZC3H18 ANKRD11 ENSG00000268218 ENSG00000260121 ACSF3 ENSG00000260279 GALNS
GH16I088511 Enhancer 0.7 ENCODE dbSUPER 24.8 +18.8 18843 2.7 PAF1 RING1 GLIS2 RFX1 RCOR1 BMI1 CHD2 LOC100128882 ENSG00000259877 CTU2 LOC101927863 SPG7 ENSG00000268218 ANKRD11 MIR5189 ZFPM1
GH16I089382 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.4 -851.3 -851322 1.4 HDAC1 HDGF ARID4B SIN3A RAD21 TCF12 ZNF121 GATA2 ZNF207 EGR2 AFG3L1P ANKRD11 MC1R ENSG00000259877 URAHP TCF25 LOC100128882 RNU6-430P CTU2 LOC101927863
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128882 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100128882 Gene

Genomic Locations for LOC100128882 Gene
chr16:88,512,836-88,531,995
(GRCh38/hg38)
Size:
19,160 bases
Orientation:
Minus strand
chr16:88,579,368-88,597,461
(GRCh37/hg19)

Genomic View for LOC100128882 Gene

Genes around LOC100128882 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128882 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128882 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100128882 Gene

Proteins for LOC100128882 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC100128882 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128882 Gene

Domains & Families for LOC100128882 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128882 Gene

Function for LOC100128882 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC100128882 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128882 Gene

Localization for LOC100128882 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128882 Gene

Pathways & Interactions for LOC100128882 Gene

SuperPathways for LOC100128882 Gene

PathCards logo More details on SuperPathways for LOC100128882
No Data Available

Interacting Proteins for LOC100128882 Gene

Gene Ontology (GO) - Biological Process for LOC100128882 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128882 Gene

Drugs & Compounds for LOC100128882 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC100128882 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC100128882 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128882 Gene

No ASD Table

Relevant External Links for LOC100128882 Gene

GeneLoc Exon Structure for
LOC100128882

Expression for LOC100128882 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128882 Gene

mRNA expression in normal human tissues for LOC100128882 Gene
mRNA expression by GTEx for LOC100128882 Gene
genes like me logo Genes that share expression patterns with LOC100128882: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128882 Gene

Orthologs for LOC100128882 Gene

Evolution for LOC100128882 Gene

ENSEMBL:
Gene Tree for LOC100128882 (if available)
TreeFam:
Gene Tree for LOC100128882 (if available)

No data available for Orthologs for LOC100128882 Gene

Paralogs for LOC100128882 Gene

No data available for Paralogs for LOC100128882 Gene

Variants for LOC100128882 Gene

Sequence variations from dbSNP and Humsavar for LOC100128882 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000014011 -- 88,518,097(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000251316 -- 88,525,133(-) G/A intron_variant
rs1000266589 -- 88,523,374(-) G/A intron_variant
rs1000292131 -- 88,513,471(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000427612 -- 88,521,488(-) C/T downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128882 Gene

Disorders for LOC100128882 Gene

No disorders were found for LOC100128882 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100128882 Gene

Publications for LOC100128882 Gene

No publications were found for LOC100128882 Gene.

Products for LOC100128882 Gene

Sources for LOC100128882 Gene

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