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Aliases for LOC100128594 Gene

Subcategory (RNA class) for LOC100128594 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100128594 Gene

  • Uncharacterized LOC100128594 3
  • AC234782.2 5

External Ids for LOC100128594 Gene

Previous GeneCards Identifiers for LOC100128594 Gene

  • GC0XU901191
  • GC0XM103053

Summaries for LOC100128594 Gene

GeneCards Summary for LOC100128594 Gene

LOC100128594 (Uncharacterized LOC100128594) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128594 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128594 Gene

Genomics for LOC100128594 Gene

GeneHancer (GH) Regulatory Elements for LOC100128594 Gene

Promoters and enhancers for LOC100128594 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI103917 Promoter/Enhancer 1.3 Ensembl ENCODE 550.8 +0.9 932 2.8 PKNOX1 SIN3A ZNF335 GLIS2 SCRT2 BCLAF1 EGR2 SMARCA5 SP3 ZNF654 LOC100128594 TMSB15B H2BFM ENSG00000235946 SLC25A53 FAM199X RAB9B
GH0XI103920 Enhancer 0.3 Ensembl 550.8 -0.9 -876 0.2 ZFX LOC100128594 TMSB15B LOC644261
GH0XI104317 Enhancer 0.8 Ensembl ENCODE 3.9 -398.6 -398620 2.1 ELF3 ZNF3 PKNOX1 CEBPB GABPA NFIL3 SP1 JUND POLR2A ETV4 SLC25A53 LOC100128594 GC0XM104365 ESX1
GH0XI104324 Enhancer 0.4 ENCODE 4 -405.0 -404956 2 PRDM1 TRIM28 LOC100128594 GC0XM104365 ESX1
GH0XI104329 Enhancer 0.3 ENCODE 4 -410.6 -410646 2.5 CEBPB LOC100128594 GC0XM104365 ESX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128594 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100128594 Gene

Genomic Locations for LOC100128594 Gene
chrX:103,916,984-103,920,025
(GRCh38/hg38)
Size:
3,042 bases
Orientation:
Minus strand
chrX:103,172,005-103,174,131
(GRCh37/hg19)

Genomic View for LOC100128594 Gene

Genes around LOC100128594 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128594 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128594 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128594 Gene

Proteins for LOC100128594 Gene

Post-translational modifications for LOC100128594 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128594 Gene

Domains & Families for LOC100128594 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128594 Gene

Function for LOC100128594 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128594 Gene

Localization for LOC100128594 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128594 Gene

Pathways & Interactions for LOC100128594 Gene

SuperPathways for LOC100128594 Gene

No Data Available

Interacting Proteins for LOC100128594 Gene

Gene Ontology (GO) - Biological Process for LOC100128594 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128594 Gene

Drugs & Compounds for LOC100128594 Gene

No Compound Related Data Available

Transcripts for LOC100128594 Gene

mRNA/cDNA for LOC100128594 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100128594 Gene

Uncharacterized LOC100128594:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128594 Gene

No ASD Table

Relevant External Links for LOC100128594 Gene

GeneLoc Exon Structure for
LOC100128594

Expression for LOC100128594 Gene

SOURCE GeneReport for Unigene cluster for LOC100128594 Gene:

Hs.744593
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128594 Gene

Orthologs for LOC100128594 Gene

Evolution for LOC100128594 Gene

ENSEMBL:
Gene Tree for LOC100128594 (if available)
TreeFam:
Gene Tree for LOC100128594 (if available)

No data available for Orthologs for LOC100128594 Gene

Paralogs for LOC100128594 Gene

No data available for Paralogs for LOC100128594 Gene

Variants for LOC100128594 Gene

Sequence variations from dbSNP and Humsavar for LOC100128594 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1008559233 -- 103,917,759(-) G/A non_coding_transcript_variant
rs1009006901 -- 103,917,092(-) G/A downstream_transcript_variant
rs1024386530 -- 103,918,031(-) T/C non_coding_transcript_variant
rs1027742681 -- 103,917,364(-) A/T downstream_transcript_variant
rs1027881848 -- 103,917,908(-) T/C non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128594 Gene

Disorders for LOC100128594 Gene

Additional Disease Information for LOC100128594

No disorders were found for LOC100128594 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128594 Gene

Publications for LOC100128594 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes. (PMID: 16368877) Choy KW … Pang CP (Physiological genomics 2006) 3 58

Products for LOC100128594 Gene

Sources for LOC100128594 Gene

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