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Aliases for LOC100128588 Gene

Aliases for LOC100128588 Gene

  • PIN2 (TERF1) Interacting Telomerase Inhibitor 1 Pseudogene 3
  • AL365214.1 5

External Ids for LOC100128588 Gene

Previous GeneCards Identifiers for LOC100128588 Gene

  • GC06U901187
  • GC06M112726
  • GC06M112620

Summaries for LOC100128588 Gene

GeneCards Summary for LOC100128588 Gene

LOC100128588 (PIN2 (TERF1) Interacting Telomerase Inhibitor 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100128588 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128588 Gene

Genomics for LOC100128588 Gene

GeneHancer (GH) Regulatory Elements for LOC100128588 Gene

Promoters and enhancers for LOC100128588 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J112324 Enhancer 0.3 dbSUPER 650.7 +1.2 1211 1.7 NR2F2 GC06M112326 LOC100128588 WISP3 GC06M112324 LAMA4 ENSG00000281613
GH06J112249 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.6 +74.5 74496 6.6 HDGF SIN3A FEZF1 GLI4 ZNF2 YY1 ZNF121 GLIS2 ZNF213 KLF7 LAMA4 ENSG00000220506 BRD7P4 FCF1P5 RNU6-1226P LOC100128588 MFSD4B LOC101927640 ENSG00000226440 ENSG00000281613
GH06J112231 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.2 +92.0 92015 7.2 PKNOX1 ARNT FEZF1 ZNF2 ZNF121 GLIS2 ZNF213 KLF7 FOS RXRA ENSG00000226440 ENSG00000271208 ENSG00000281613 LOC101927640 LAMA4 LOC100128588 WISP3
GH06J112213 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.6 +110.3 110301 6 PKNOX1 FOXA2 ZNF493 FEZF1 ZNF2 YY1 GLIS2 FOS SP3 RXRA LAMA4 RNU6-1226P ENSG00000220506 ENSG00000237234 LOC100128588 BRD7P4 FCF1P5 ENSG00000270661 GC06M112197
GH06J112280 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.3 +44.8 44792 2.2 CTCF PKNOX1 FEZF1 RAD21 POLR2A ZBTB48 RCOR1 FOS ZNF600 CHD2 LOC100128588 LAMA4 GC06M112326 ENSG00000226440 LOC101927640 ENSG00000281613
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128588 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128588 gene promoter:
  • STAT5B
  • RFX1
  • YY1
  • GCNF-2
  • GCNF-1
  • GCNF
  • POU2F1
  • POU2F1a
  • POU2F1c
  • POU2F1b

Genomic Locations for LOC100128588 Gene

Genomic Locations for LOC100128588 Gene
chr6:112,325,509-112,326,865
(GRCh38/hg38)
Size:
1,357 bases
Orientation:
Minus strand
chr6:112,646,928-112,647,984
(GRCh37/hg19)
Size:
1,057 bases
Orientation:
Minus strand

Genomic View for LOC100128588 Gene

Genes around LOC100128588 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128588 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128588 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128588 Gene

Proteins for LOC100128588 Gene

Post-translational modifications for LOC100128588 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128588 Gene

Domains & Families for LOC100128588 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128588 Gene

Function for LOC100128588 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128588 Gene

Localization for LOC100128588 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128588 Gene

Pathways & Interactions for LOC100128588 Gene

SuperPathways for LOC100128588 Gene

No Data Available

Interacting Proteins for LOC100128588 Gene

Gene Ontology (GO) - Biological Process for LOC100128588 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128588 Gene

Drugs & Compounds for LOC100128588 Gene

No Compound Related Data Available

Transcripts for LOC100128588 Gene

mRNA/cDNA for LOC100128588 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128588 Gene

No ASD Table

Relevant External Links for LOC100128588 Gene

GeneLoc Exon Structure for
LOC100128588

Expression for LOC100128588 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128588 Gene

genes like me logo Genes that share expression patterns with LOC100128588: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128588 Gene

Orthologs for LOC100128588 Gene

Evolution for LOC100128588 Gene

ENSEMBL:
Gene Tree for LOC100128588 (if available)
TreeFam:
Gene Tree for LOC100128588 (if available)

No data available for Orthologs for LOC100128588 Gene

Paralogs for LOC100128588 Gene

No data available for Paralogs for LOC100128588 Gene

Variants for LOC100128588 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128588 Gene

Disorders for LOC100128588 Gene

No disorders were found for LOC100128588 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100128588 Gene

Publications for LOC100128588 Gene

  1. A high-throughput approach for measuring temporal changes in the interactome. (PMID: 22863883) Kristensen AR … Foster LJ (Nature methods 2012) 3 58

Products for LOC100128588 Gene

Sources for LOC100128588 Gene

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