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Aliases for LOC100128573 Gene

Subcategory (RNA class) for LOC100128573 Gene

lncRNA

Quality Score for this RNA gene is

1

Aliases for LOC100128573 Gene

  • Uncharacterized LOC100128573 3

External Ids for LOC100128573 Gene

ORGUL Members for LOC100128573 Gene

Previous GeneCards Identifiers for LOC100128573 Gene

  • GC19U900766
  • GC19M007444
  • GC19M007537

Summaries for LOC100128573 Gene

GeneCards Summary for LOC100128573 Gene

LOC100128573 (Uncharacterized LOC100128573) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100128573 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128573 Gene

Genomics for LOC100128573 Gene

GeneHancer (GH) Regulatory Elements for LOC100128573 Gene

Promoters and enhancers for LOC100128573 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I007472 Enhancer 0.9 Ensembl ENCODE 550.8 +0.2 157 0.8 CBFB BACH1 EBF1 DPF2 ATF2 IRF4 ZNF217 BCL11A IKZF1 NFATC1 LOC100128573 PIR39674 GC19P007466 ARHGEF18
GH19I007487 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 -15.7 -15749 2.3 ATF1 SIN3A ZNF2 BRCA1 YY1 POLR2B ZNF213 E2F8 ZNF207 ZNF143 PEX11G TEX45 LOC100128573
GH19I007482 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 -10.1 -10099 2.2 KLF1 PKNOX1 E4F1 RARA GATA3 CTBP1 GATA2 POLR2A EGR1 VEZF1 PEX11G ARHGEF18 MCOLN1 EVI5L STXBP2 PNPLA6 CD209 TEX45 LOC100128573
GH19I007479 Enhancer 0.9 Ensembl ENCODE 0.4 -7.1 -7091 2.7 HDGF ZFP64 FEZF1 ZIC2 RARA ZNF316 PRDM10 NFE2 MAFK ZBTB20 PEX11G LOC100128573 TEX45
GH19I007491 Enhancer 0.9 Ensembl ENCODE 0.4 -19.2 -19240 1.6 ATF1 JUN CEBPG MCM2 FOSL1 POLR2A CREM SOX6 CEBPB ATF2 TEX45 PEX11G HNRNPM LOC100128573
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128573 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128573 gene promoter:

Genomic Locations for LOC100128573 Gene

Genomic Locations for LOC100128573 Gene
chr19:7,472,837-7,473,361
(GRCh38/hg38)
Size:
525 bases
Orientation:
Minus strand
chr19:7,537,723-7,538,247
(GRCh37/hg19)

Genomic View for LOC100128573 Gene

Genes around LOC100128573 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128573 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128573 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128573 Gene

Proteins for LOC100128573 Gene

Post-translational modifications for LOC100128573 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128573 Gene

Domains & Families for LOC100128573 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128573 Gene

Function for LOC100128573 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128573 Gene

Localization for LOC100128573 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128573 Gene

Pathways & Interactions for LOC100128573 Gene

SuperPathways for LOC100128573 Gene

No Data Available

Interacting Proteins for LOC100128573 Gene

Gene Ontology (GO) - Biological Process for LOC100128573 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128573 Gene

Drugs & Compounds for LOC100128573 Gene

No Compound Related Data Available

Transcripts for LOC100128573 Gene

mRNA/cDNA for LOC100128573 Gene

(1) Additional mRNA sequences :

Unigene Clusters for LOC100128573 Gene

Uncharacterized LOC100128573:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128573 Gene

No ASD Table

Relevant External Links for LOC100128573 Gene

GeneLoc Exon Structure for
LOC100128573

Expression for LOC100128573 Gene

SOURCE GeneReport for Unigene cluster for LOC100128573 Gene:

Hs.722827
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128573 Gene

Orthologs for LOC100128573 Gene

No data available for Orthologs and Evolution for LOC100128573 Gene

Paralogs for LOC100128573 Gene

No data available for Paralogs for LOC100128573 Gene

Variants for LOC100128573 Gene

Sequence variations from dbSNP and Humsavar for LOC100128573 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1001132297 -- 7,474,539(-) C/T upstream_transcript_variant
rs1001288333 -- 7,473,927(-) G/A upstream_transcript_variant
rs1002693341 -- 7,473,323(-) T/A non_coding_transcript_variant
rs1003728299 -- 7,472,481(-) G/A downstream_transcript_variant
rs1004194652 -- 7,475,268(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100128573 Gene

Variant ID Type Subtype PubMed ID
esv2751809 CNV gain 17911159
esv3643586 CNV loss 21293372
nsv1060887 CNV gain 25217958
nsv509719 CNV insertion 20534489

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100128573 Gene

Disorders for LOC100128573 Gene

Additional Disease Information for LOC100128573

No disorders were found for LOC100128573 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128573 Gene

Publications for LOC100128573 Gene

No publications were found for LOC100128573 Gene.

Products for LOC100128573 Gene

Sources for LOC100128573 Gene

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