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Aliases for LOC100128568 Gene

Subcategory (RNA class) for LOC100128568 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100128568 Gene

  • Uncharacterized LOC100128568 3
  • CTC-232P5.1 3
  • AC011444.1 5

External Ids for LOC100128568 Gene

Previous GeneCards Identifiers for LOC100128568 Gene

  • GC19U900833
  • GC19P005929

Summaries for LOC100128568 Gene

GeneCards Summary for LOC100128568 Gene

LOC100128568 (Uncharacterized LOC100128568) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128568 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128568 Gene

Genomics for LOC100128568 Gene

GeneHancer (GH) Regulatory Elements for LOC100128568 Gene

Promoters and enhancers for LOC100128568 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J005976 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 650.7 +0.1 106 3.5 HDGF MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 LOC100128568 RANBP3 CAPS DUS3L ENSG00000267571 NDUFA11 VMAC SAFB GPR108 FUT5
GH19J005984 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +6.7 6721 1.9 ATF1 TAF9B NFRKB YY1 TCF12 ZNF121 ZNF766 GATA2 ATF7 CREM CAPS KHSRP RANBP3 SAFB2 PTPRS PIR36394 LOC100128568
GH19J005986 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +9.2 9182 1.2 FOXA2 MLX ARID4B ZNF2 ZNF143 DEK NFKBIZ SP5 REST NFIL3 CAPS PIR36394 LOC100128568
GH19J005982 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +5.1 5094 1 PKNOX1 ARID4B DMAP1 ZNF48 YY1 ZNF614 THAP11 MIXL1 PAF1 RXRA CAPS RANBP3 SAFB KHSRP SAFB2 PIR36394 LOC100128568
GH19J005992 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +15.3 15282 2.1 SKI RFX1 FOXA2 RFX3 RCOR1 SMAD4 ZIC2 CHD2 NR2F2 PIR50631 CAPS PIR36394 LOC100128568 RFX2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128568 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100128568 Gene

Genomic Locations for LOC100128568 Gene
chr19:5,978,403-6,020,363
(GRCh38/hg38)
Size:
41,961 bases
Orientation:
Plus strand
chr19:5,978,414-6,020,374
(GRCh37/hg19)
Size:
41,961 bases
Orientation:
Plus strand

Genomic View for LOC100128568 Gene

Genes around LOC100128568 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128568 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128568 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128568 Gene

Proteins for LOC100128568 Gene

Post-translational modifications for LOC100128568 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128568 Gene

Domains & Families for LOC100128568 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128568 Gene

Function for LOC100128568 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128568 Gene

Localization for LOC100128568 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128568 Gene

Pathways & Interactions for LOC100128568 Gene

SuperPathways for LOC100128568 Gene

No Data Available

Interacting Proteins for LOC100128568 Gene

Gene Ontology (GO) - Biological Process for LOC100128568 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128568 Gene

Drugs & Compounds for LOC100128568 Gene

No Compound Related Data Available

Transcripts for LOC100128568 Gene

mRNA/cDNA for LOC100128568 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LOC100128568 Gene

Uncharacterized LOC100128568:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128568 Gene

No ASD Table

Relevant External Links for LOC100128568 Gene

GeneLoc Exon Structure for
LOC100128568

Expression for LOC100128568 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128568 Gene

SOURCE GeneReport for Unigene cluster for LOC100128568 Gene:

Hs.624525
genes like me logo Genes that share expression patterns with LOC100128568: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128568 Gene

Orthologs for LOC100128568 Gene

Evolution for LOC100128568 Gene

ENSEMBL:
Gene Tree for LOC100128568 (if available)
TreeFam:
Gene Tree for LOC100128568 (if available)

No data available for Orthologs for LOC100128568 Gene

Paralogs for LOC100128568 Gene

No data available for Paralogs for LOC100128568 Gene

Variants for LOC100128568 Gene

Sequence variations from dbSNP and Humsavar for LOC100128568 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000125464 -- 5,998,176(+) C/T intron_variant
rs1000161172 -- 6,012,151(+) G/A non_coding_transcript_variant
rs1000176630 -- 5,979,186(+) C/G intron_variant
rs1000207619 -- 5,990,828(+) C/G intron_variant
rs1000209609 -- 5,988,466(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100128568 Gene

Variant ID Type Subtype PubMed ID
nsv1142926 CNV tandem duplication 24896259
nsv1140144 CNV insertion 24896259
esv3643545 CNV loss 21293372
esv3583213 CNV loss 25503493

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100128568 Gene

Disorders for LOC100128568 Gene

Additional Disease Information for LOC100128568

No disorders were found for LOC100128568 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128568 Gene

Publications for LOC100128568 Gene

No publications were found for LOC100128568 Gene.

Products for LOC100128568 Gene

Sources for LOC100128568 Gene

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