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Aliases for LOC100128531 Gene

Subcategory (RNA class) for LOC100128531 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100128531 Gene

  • Uncharacterized LOC100128531 3
  • CTA-221G9.11 3
  • AL022323.1 5

External Ids for LOC100128531 Gene

Previous GeneCards Identifiers for LOC100128531 Gene

  • GC22U900450
  • GC22M023828
  • GC22M025499
  • GC22M025191
  • GC22M025195
  • GC22M025342
  • GC22M025460
  • GC22M025639
  • GC22M025825
  • GC22M026011
  • GC22M026190

Summaries for LOC100128531 Gene

GeneCards Summary for LOC100128531 Gene

LOC100128531 (Uncharacterized LOC100128531) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128531 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128531 Gene

Genomics for LOC100128531 Gene

GeneHancer (GH) Regulatory Elements for LOC100128531 Gene

Promoters and enhancers for LOC100128531 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J025110 Promoter/Enhancer 1.9 Ensembl ENCODE dbSUPER 650.7 -0.1 -140 5.6 HDGF PKNOX1 FOXA2 ARID4B NEUROD1 SIN3A FEZF1 ZNF2 YY1 SLC30A9 LOC100128531 CRYBB2P1 SNRPD3 SPECC1L CRYBB3 ENSG00000236641 CRYBB2 GC22M026570 KIAA1671
GH22J025067 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +43.4 43434 4.4 MEIS2 PKNOX1 EBF1 PLRG1 BATF ZIC2 POLR2A ZSCAN5C ATF7 RCOR1 LOC100128531 TMEM211 KIAA1671 CRYBB2 ENSG00000236641 ENSG00000279110
GH22J025168 Enhancer 1 ENCODE dbSUPER 12 -56.6 -56624 1.3 FOXA2 RAD21 YY1 FOS CREM NFKBIZ HMG20B RXRA SP5 CEBPB LOC100128531 CRYBB3 ENSG00000236641 CRYBB2 GC22M026570 KIAA1671
GH22J025153 Enhancer 0.9 Ensembl ENCODE dbSUPER 11.4 -41.9 -41885 1.2 SP1 RXRA CEBPA CEBPB HNF4A CEBPG RAD21 LOC100128531 CRYBB2 KIAA1671 GC22M026570
GH22J025167 Enhancer 0.9 ENCODE dbSUPER 11.3 -54.6 -54637 0.2 FOXA2 MAX RAD21 YY1 HNF4G RXRA PPARG NR2F2 FOXA1 SP1 LOC100128531 CRYBB3 ENSG00000236641 CRYBB2 GC22M026570 KIAA1671
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128531 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100128531 Gene

Genomic Locations for LOC100128531 Gene
chr22:25,102,417-25,112,692
(GRCh38/hg38)
Size:
10,276 bases
Orientation:
Minus strand
chr22:25,498,384-25,508,659
(GRCh37/hg19)
Size:
10,276 bases
Orientation:
Minus strand

Genomic View for LOC100128531 Gene

Genes around LOC100128531 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128531 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128531 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128531 Gene

Proteins for LOC100128531 Gene

Post-translational modifications for LOC100128531 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128531 Gene

Domains & Families for LOC100128531 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128531 Gene

Function for LOC100128531 Gene

Phenotypes From GWAS Catalog for LOC100128531 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128531 Gene

Localization for LOC100128531 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128531 Gene

Pathways & Interactions for LOC100128531 Gene

SuperPathways for LOC100128531 Gene

No Data Available

Interacting Proteins for LOC100128531 Gene

Gene Ontology (GO) - Biological Process for LOC100128531 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128531 Gene

Drugs & Compounds for LOC100128531 Gene

No Compound Related Data Available

Transcripts for LOC100128531 Gene

mRNA/cDNA for LOC100128531 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC100128531 Gene

Uncharacterized LOC100128531:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128531 Gene

No ASD Table

Relevant External Links for LOC100128531 Gene

GeneLoc Exon Structure for
LOC100128531

Expression for LOC100128531 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128531 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100128531 Gene

This gene is overexpressed in Muscle - Skeletal (x23.2).

SOURCE GeneReport for Unigene cluster for LOC100128531 Gene:

Hs.662126
genes like me logo Genes that share expression patterns with LOC100128531: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128531 Gene

Orthologs for LOC100128531 Gene

Evolution for LOC100128531 Gene

ENSEMBL:
Gene Tree for LOC100128531 (if available)
TreeFam:
Gene Tree for LOC100128531 (if available)

No data available for Orthologs for LOC100128531 Gene

Paralogs for LOC100128531 Gene

No data available for Paralogs for LOC100128531 Gene

Variants for LOC100128531 Gene

Sequence variations from dbSNP and Humsavar for LOC100128531 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000013949 -- 25,105,080(-) A/G intron_variant
rs1000066419 -- 25,105,319(-) G/A intron_variant
rs1000068911 -- 25,102,734(-) C/T non_coding_transcript_variant
rs1000193826 -- 25,110,473(-) T/A intron_variant
rs1000369085 -- 25,113,693(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100128531 Gene

Variant ID Type Subtype PubMed ID
nsv7350 OTHER inversion 18451855
nsv469581 CNV loss 16826518
nsv3581 CNV insertion 18451855
nsv1151112 CNV deletion 26484159
nsv1110863 OTHER inversion 24896259
esv2758829 CNV gain+loss 17122850

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100128531 Gene

Disorders for LOC100128531 Gene

Additional Disease Information for LOC100128531

No disorders were found for LOC100128531 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128531 Gene

Publications for LOC100128531 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC100128531 Gene

Sources for LOC100128531 Gene

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