Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100128494 Gene

Subcategory (RNA class) for LOC100128494 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100128494 Gene

  • Uncharacterized LOC100128494 3
  • AP002490.1 5

External Ids for LOC100128494 Gene

Previous GeneCards Identifiers for LOC100128494 Gene

  • GC11U901133
  • GC11P071406

Summaries for LOC100128494 Gene

GeneCards Summary for LOC100128494 Gene

LOC100128494 (Uncharacterized LOC100128494) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128494 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128494 Gene

Genomics for LOC100128494 Gene

GeneHancer (GH) Regulatory Elements for LOC100128494 Gene

Promoters and enhancers for LOC100128494 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J072012 Promoter/Enhancer 1.2 EPDnew ENCODE dbSUPER 650.7 -0.7 -698 2.3 SREBF2 RBM22 HNF4A ZNF600 ZFX MAFK NUMA1 LOC100128494 PIR31278 LRTOMT PIR48081
GH11J072014 Enhancer 0.5 dbSUPER 650.7 +1.0 1016 0.8 CTCF ZNF10 ZNF143 SMC3 ZBTB33 PIR48139 PIR31278 LOC100128494 LRTOMT NUMA1
GH11J072430 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 97.3 +418.6 418636 4.7 ZFP64 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 ZC3H11A ZNF610 ZNF585B CLPB NUMA1 LOC100128494 ZNF705E RNF121 IL18BP NADSYN1 FAM86C1 ENSG00000255672 ENSG00000256739
GH11J071927 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 53.6 -84.5 -84457 5.5 HDGF HNRNPUL1 PKNOX1 CLOCK FOXA2 SMAD1 ARNT ARID4B SIN3A FEZF1 RNF121 LOC100133315 NUMA1 LOC100128494 ZNF705E IL18BP NADSYN1 FAM86C1 LOC220077 KRTAP5-13P
GH11J071446 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 28.9 -563.2 -563235 8.5 HDGF PKNOX1 CLOCK FOXA2 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 NADSYN1 DHCR7 ENSG00000254682 NUMA1 LOC100128494 ZNF705E IL18BP ALG1L9P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128494 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100128494 Gene

Genomic Locations for LOC100128494 Gene
chr11:72,014,291-72,020,910
(GRCh38/hg38)
Size:
6,620 bases
Orientation:
Plus strand
chr11:71,725,337-71,731,956
(GRCh37/hg19)
Size:
6,620 bases
Orientation:
Plus strand

Genomic View for LOC100128494 Gene

Genes around LOC100128494 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128494 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128494 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128494 Gene

Proteins for LOC100128494 Gene

Post-translational modifications for LOC100128494 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128494 Gene

Domains & Families for LOC100128494 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128494 Gene

Function for LOC100128494 Gene

Phenotypes From GWAS Catalog for LOC100128494 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128494 Gene

Localization for LOC100128494 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128494 Gene

Pathways & Interactions for LOC100128494 Gene

SuperPathways for LOC100128494 Gene

No Data Available

Interacting Proteins for LOC100128494 Gene

Gene Ontology (GO) - Biological Process for LOC100128494 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128494 Gene

Drugs & Compounds for LOC100128494 Gene

No Compound Related Data Available

Transcripts for LOC100128494 Gene

mRNA/cDNA for LOC100128494 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LOC100128494 Gene

Uncharacterized LOC100128494:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128494 Gene

No ASD Table

Relevant External Links for LOC100128494 Gene

GeneLoc Exon Structure for
LOC100128494

Expression for LOC100128494 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128494 Gene

SOURCE GeneReport for Unigene cluster for LOC100128494 Gene:

Hs.713607
genes like me logo Genes that share expression patterns with LOC100128494: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128494 Gene

Orthologs for LOC100128494 Gene

Evolution for LOC100128494 Gene

ENSEMBL:
Gene Tree for LOC100128494 (if available)
TreeFam:
Gene Tree for LOC100128494 (if available)

No data available for Orthologs for LOC100128494 Gene

Paralogs for LOC100128494 Gene

No data available for Paralogs for LOC100128494 Gene

Variants for LOC100128494 Gene

Sequence variations from dbSNP and Humsavar for LOC100128494 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000061300 -- 72,014,287(+) C/T upstream_transcript_variant
rs1000094189 -- 72,020,743(+) T/C/G non_coding_transcript_variant
rs1000526484 -- 72,020,922(+) C/T downstream_transcript_variant
rs1000963098 -- 72,019,304(+) A/G intron_variant
rs1001520013 -- 72,019,140(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100128494 Gene

Variant ID Type Subtype PubMed ID
nsv951037 CNV deletion 24416366
nsv428262 CNV gain+loss 18775914

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100128494 Gene

Disorders for LOC100128494 Gene

Additional Disease Information for LOC100128494

No disorders were found for LOC100128494 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128494 Gene

Publications for LOC100128494 Gene

No publications were found for LOC100128494 Gene.

Products for LOC100128494 Gene

Sources for LOC100128494 Gene

Content
Loading form....