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Aliases for LOC100128398 Gene

Subcategory (RNA class) for LOC100128398 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100128398 Gene

  • Uncharacterized LOC100128398 3
  • AC008969.1 5

External Ids for LOC100128398 Gene

Previous GeneCards Identifiers for LOC100128398 Gene

  • GC19P063206
  • GC19P058513

Summaries for LOC100128398 Gene

GeneCards Summary for LOC100128398 Gene

LOC100128398 (Uncharacterized LOC100128398) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128398 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128398 Gene

Genomics for LOC100128398 Gene

GeneHancer (GH) Regulatory Elements for LOC100128398 Gene

Promoters and enhancers for LOC100128398 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J058001 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 700.4 +0.6 640 2.6 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 ZNF143 SP3 NFYC LOC100128398 ZNF606 C19orf18 ZNF17 ZNF446 ZNF549 ZNF135 ZNF132 ZNF418 ZNF417
GH19J058379 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 64.6 +379.0 379024 2.9 ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ZNF837 TRIM28 LOC100128398 ZNF606 ZNF329 ZNF135 ZNF132 ZNF446 ZSCAN18 ZNF548
GH19J058325 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 57.1 +324.8 324810 3.6 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZSCAN22 PIR44424 LOC105372480 ZNF134 ZNF606 ZNF417 ZNF17 ZNF446 TRIM28 ZNF549
GH19J058181 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 53.5 +181.2 181175 2.5 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF274 ZNF134 ZNF417 ZNF606 ZNF17 ZNF550 ZNF549 TRIM28 ZNF264 ZNF773
GH19J058553 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 42.4 +555.1 555052 7.2 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 UBE2M CHMP2A TRIM28 ZNF417 ZNF134 ZNF606 ZNF274 ZNF586 MZF1 LOC100128398
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128398 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128398 gene promoter:
  • c-Jun
  • ATF-2
  • AP-1
  • C/EBPbeta
  • GR
  • GR-alpha
  • GR-beta
  • Evi-1

Genomic Locations for LOC100128398 Gene

Genomic Locations for LOC100128398 Gene
chr19:58,002,061-58,011,232
(GRCh38/hg38)
Size:
9,172 bases
Orientation:
Plus strand
chr19:58,513,429-58,522,600
(GRCh37/hg19)
Size:
9,172 bases
Orientation:
Plus strand

Genomic View for LOC100128398 Gene

Genes around LOC100128398 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128398 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128398 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128398 Gene

Proteins for LOC100128398 Gene

Post-translational modifications for LOC100128398 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128398 Gene

Domains & Families for LOC100128398 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128398 Gene

Function for LOC100128398 Gene

Phenotypes From GWAS Catalog for LOC100128398 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128398 Gene

Localization for LOC100128398 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128398 Gene

Pathways & Interactions for LOC100128398 Gene

SuperPathways for LOC100128398 Gene

No Data Available

Interacting Proteins for LOC100128398 Gene

Gene Ontology (GO) - Biological Process for LOC100128398 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128398 Gene

Drugs & Compounds for LOC100128398 Gene

No Compound Related Data Available

Transcripts for LOC100128398 Gene

mRNA/cDNA for LOC100128398 Gene

(5) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Unigene Clusters for LOC100128398 Gene

Uncharacterized LOC100128398:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128398 Gene

No ASD Table

Relevant External Links for LOC100128398 Gene

GeneLoc Exon Structure for
LOC100128398

Expression for LOC100128398 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128398 Gene

SOURCE GeneReport for Unigene cluster for LOC100128398 Gene:

Hs.655081

Evidence on tissue expression from TISSUES for LOC100128398 Gene

  • Nervous system(2.5)
genes like me logo Genes that share expression patterns with LOC100128398: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128398 Gene

Orthologs for LOC100128398 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC100128398 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 97 (a)
OneToOne
Species where no ortholog for LOC100128398 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC100128398 Gene

ENSEMBL:
Gene Tree for LOC100128398 (if available)
TreeFam:
Gene Tree for LOC100128398 (if available)

Paralogs for LOC100128398 Gene

No data available for Paralogs for LOC100128398 Gene

Variants for LOC100128398 Gene

Sequence variations from dbSNP and Humsavar for LOC100128398 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000313862 -- 58,003,253(+) C/T non_coding_transcript_variant
rs1001266483 -- 58,004,719(+) C/T intron_variant
rs1001932481 -- 58,002,671(+) G/A/T upstream_transcript_variant
rs1002180929 -- 58,005,030(+) A/G intron_variant
rs1002847063 -- 58,002,878(+) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100128398 Gene

Variant ID Type Subtype PubMed ID
nsv833885 CNV loss 17160897
nsv1066059 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100128398 Gene

Disorders for LOC100128398 Gene

Additional Disease Information for LOC100128398

No disorders were found for LOC100128398 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128398 Gene

Publications for LOC100128398 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100128398 Gene

Sources for LOC100128398 Gene

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