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Aliases for LOC100128386 Gene

Subcategory (RNA class) for LOC100128386 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100128386 Gene

  • Uncharacterized LOC100128386 3
  • CTD-2383M3.1 3
  • AP001351.1 5

External Ids for LOC100128386 Gene

Previous GeneCards Identifiers for LOC100128386 Gene

  • GC11U901187
  • GC11M100060
  • GC11M100554

Summaries for LOC100128386 Gene

GeneCards Summary for LOC100128386 Gene

LOC100128386 (Uncharacterized LOC100128386) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128386 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128386 Gene

Genomics for LOC100128386 Gene

GeneHancer (GH) Regulatory Elements for LOC100128386 Gene

Promoters and enhancers for LOC100128386 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J100686 Promoter/Enhancer 1.4 Ensembl ENCODE 659.2 +0.3 271 3 PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF48 ZNF143 SP3 JUNB ETV4 ARHGAP42 LOC100128386 GC11P100662
GH11J100774 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.8 -88.6 -88579 4.7 IRF2 FOXA2 DMAP1 ZNF384 ZNF644 RBPJ FOSL1 GATA3 HNF4G FOSL2 ARHGAP42 LOC100128386 RN7SKP115
GH11J100718 Enhancer 1 Ensembl ENCODE 11.1 -31.8 -31777 1.6 FOXA2 FEZF1 RAD21 RFX5 YY1 EGR1 RCOR1 FOS RXRA REST ARHGAP42 LOC100128386 RN7SKP115
GH11J100632 Enhancer 0.9 Ensembl ENCODE 10.9 +54.8 54765 2.3 NFIB MAX RAD21 YY1 TEAD3 GATA3 EGR1 HNF4G NFIA RXRA ARHGAP42 LOC100128386 RN7SL222P GC11M100607
GH11J100680 Enhancer 1.1 Ensembl ENCODE 8.3 +6.6 6551 1.1 HDGF PKNOX1 FOXA2 ARID4B IRF4 ZNF766 ZNF143 ATF7 RUNX3 SP5 LOC100128386 ARHGAP42 PPIAP43 GC11P100662
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128386 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128386 gene promoter:
  • Arnt
  • AhR
  • COMP1
  • FOXJ2 (long isoform)
  • FOXJ2
  • POU3F2
  • YY1
  • Zic3
  • PPAR-gamma2
  • PPAR-gamma1

Genomic Locations for LOC100128386 Gene

Genomic Locations for LOC100128386 Gene
chr11:100,684,161-100,687,955
(GRCh38/hg38)
Size:
3,795 bases
Orientation:
Minus strand
chr11:100,554,893-100,558,686
(GRCh37/hg19)
Size:
3,794 bases
Orientation:
Minus strand

Genomic View for LOC100128386 Gene

Genes around LOC100128386 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128386 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128386 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128386 Gene

Proteins for LOC100128386 Gene

Post-translational modifications for LOC100128386 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128386 Gene

Domains & Families for LOC100128386 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128386 Gene

Function for LOC100128386 Gene

Phenotypes From GWAS Catalog for LOC100128386 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128386 Gene

Localization for LOC100128386 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128386 Gene

Pathways & Interactions for LOC100128386 Gene

SuperPathways for LOC100128386 Gene

No Data Available

Interacting Proteins for LOC100128386 Gene

Gene Ontology (GO) - Biological Process for LOC100128386 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128386 Gene

Drugs & Compounds for LOC100128386 Gene

No Compound Related Data Available

Transcripts for LOC100128386 Gene

mRNA/cDNA for LOC100128386 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC100128386 Gene

Uncharacterized LOC100128386:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128386 Gene

No ASD Table

Relevant External Links for LOC100128386 Gene

GeneLoc Exon Structure for
LOC100128386

Expression for LOC100128386 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128386 Gene

mRNA expression in normal human tissues for LOC100128386 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100128386 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x5.4).

SOURCE GeneReport for Unigene cluster for LOC100128386 Gene:

Hs.635125
genes like me logo Genes that share expression patterns with LOC100128386: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128386 Gene

Orthologs for LOC100128386 Gene

Evolution for LOC100128386 Gene

ENSEMBL:
Gene Tree for LOC100128386 (if available)
TreeFam:
Gene Tree for LOC100128386 (if available)

No data available for Orthologs for LOC100128386 Gene

Paralogs for LOC100128386 Gene

No data available for Paralogs for LOC100128386 Gene

Variants for LOC100128386 Gene

Sequence variations from dbSNP and Humsavar for LOC100128386 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000529573 -- 100,687,098(-) G/T intron_variant
rs1000811462 -- 100,686,472(-) C/A intron_variant
rs1000949997 -- 100,686,788(-) A/G intron_variant
rs1001503622 -- 100,685,373(-) T/C non_coding_transcript_variant
rs1001536457 -- 100,685,672(-) A/G non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128386 Gene

Disorders for LOC100128386 Gene

Additional Disease Information for LOC100128386

No disorders were found for LOC100128386 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128386 Gene

Publications for LOC100128386 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100128386 Gene

Sources for LOC100128386 Gene

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