Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100128340 Gene

Subcategory (RNA class) for LOC100128340 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100128340 Gene

  • Uncharacterized LOC100128340 3

External Ids for LOC100128340 Gene

Previous GeneCards Identifiers for LOC100128340 Gene

  • GC05U900860
  • GC05P177311
  • GC05P177302
  • GC05P177378
  • GC05P177950

Summaries for LOC100128340 Gene

GeneCards Summary for LOC100128340 Gene

LOC100128340 (Uncharacterized LOC100128340) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128340 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128340 Gene

Genomics for LOC100128340 Gene

GeneHancer (GH) Regulatory Elements for LOC100128340 Gene

Promoters and enhancers for LOC100128340 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J177874 Promoter 0.8 Ensembl 0.4 -7.9 -7943 1.6 ZNF335 ZFHX2 MXI1 NRF1 ZNF398 THAP11 EGR2 LOC728554 ENSG00000170089 ENSG00000247679 LOC100128340
GH05J177939 Promoter/Enhancer 1.1 Ensembl dbSUPER 0.2 +56.2 56157 0.6 MAZ SP3 NRF1 SP2 SIN3A ELF1 MNT ZBTB7B E2F1 CTBP1 ENSG00000250101 RMND5B ENSG00000249684 LOC100128340 ENSG00000170089
GH05J177930 Enhancer 0.8 ENCODE dbSUPER 0.2 +46.8 46811 0.2 PKNOX1 ZNF687 SIN3A DPF2 MNT ZNF217 CTBP1 CREB1 FOS ZFX ENSG00000249684 ENSG00000250101 PIR50280 LOC100128340 ENSG00000170089
GH05J177892 Enhancer 0.3 Ensembl 0.4 +8.6 8557 0.2 CTCF PIR50280 LOC100128340 ENSG00000250101 ENSG00000170089
GH05J177946 Enhancer 0.6 FANTOM5 dbSUPER 0.2 +62.5 62544 0.1 EBF1 MEF2B RMND5B PROP1 ENSG00000249684 ENSG00000250101 LOC100128340 ENSG00000170089
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128340 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128340 gene promoter:
  • aMEF-2
  • MEF-2A
  • GATA-2
  • Pax-5

Genomic Locations for LOC100128340 Gene

Genomic Locations for LOC100128340 Gene
chr5:177,883,544-177,957,757
(GRCh38/hg38)
Size:
74,214 bases
Orientation:
Plus strand

Genomic View for LOC100128340 Gene

Genes around LOC100128340 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128340 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128340 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128340 Gene

Proteins for LOC100128340 Gene

Post-translational modifications for LOC100128340 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128340 Gene

Domains & Families for LOC100128340 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128340 Gene

Function for LOC100128340 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128340 Gene

Localization for LOC100128340 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128340 Gene

Pathways & Interactions for LOC100128340 Gene

SuperPathways for LOC100128340 Gene

No Data Available

Interacting Proteins for LOC100128340 Gene

Gene Ontology (GO) - Biological Process for LOC100128340 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128340 Gene

Drugs & Compounds for LOC100128340 Gene

No Compound Related Data Available

Transcripts for LOC100128340 Gene

mRNA/cDNA for LOC100128340 Gene

(3) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for LOC100128340 Gene

Uncharacterized LOC100128340:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128340 Gene

No ASD Table

Relevant External Links for LOC100128340 Gene

GeneLoc Exon Structure for
LOC100128340

Expression for LOC100128340 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128340 Gene

SOURCE GeneReport for Unigene cluster for LOC100128340 Gene:

Hs.710582
genes like me logo Genes that share expression patterns with LOC100128340: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128340 Gene

Orthologs for LOC100128340 Gene

No data available for Orthologs and Evolution for LOC100128340 Gene

Paralogs for LOC100128340 Gene

No data available for Paralogs for LOC100128340 Gene

Variants for LOC100128340 Gene

Sequence variations from dbSNP and Humsavar for LOC100128340 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000000444 -- 177,955,562(+) C/T intron_variant
rs1000052766 -- 177,955,380(+) A/T intron_variant
rs1000062867 -- 177,956,875(+) G/A intron_variant
rs1000346379 -- 177,949,643(+) T/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000643924 -- 177,938,693(+) C/T genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128340 Gene

Disorders for LOC100128340 Gene

Additional Disease Information for LOC100128340

No disorders were found for LOC100128340 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128340 Gene

Publications for LOC100128340 Gene

No publications were found for LOC100128340 Gene.

Products for LOC100128340 Gene

Sources for LOC100128340 Gene

Content
Loading form....