Aliases for LOC100128317 Gene

Subcategory (RNA class) for LOC100128317 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LOC100128317 Gene

  • Uncharacterized LOC100128317 3
  • NONHSAG048096 92
  • Lnc-HGF-1 168

External Ids for LOC100128317 Gene

Previous GeneCards Identifiers for LOC100128317 Gene

  • GC07U902315
  • GC07M080939
  • GC07M081102
  • GC07M081489

Summaries for LOC100128317 Gene

GeneCards Summary for LOC100128317 Gene

LOC100128317 (Uncharacterized LOC100128317) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100128317 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100128317 Gene

Genomics for LOC100128317 Gene

GeneHancer (GH) Regulatory Elements for LOC100128317 Gene

Promoters and enhancers for LOC100128317 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J081689 Enhancer 1 Ensembl ENCODE dbSUPER 500.7 +0.3 305 5.4 BCL11A GATA3 KLF13 SPI1 KLF8 ZFHX2 BATF FOS ZNF189 HIC1 ENSG00000233491 LOC100128317 lnc-CD36-9 SEMA3C
GH07J081683 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +6.8 6756 3.7 EP300 ZSCAN5C TCF12 JUND FOS ZNF639 REST TRIM28 TRIM22 ZEB1 ENSG00000233491 LOC100128317 lnc-CD36-9 DDX43P3 lnc-HGF-4
GH07J081687 Enhancer 0.5 Ensembl dbSUPER 0.7 +3.4 3405 0.4 SPI1 MAFK ENSG00000233491 LOC100128317 lnc-CD36-9 DDX43P3 lnc-HGF-4
GH07J081672 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +18.3 18305 3.8 OSR2 POLR2A PRDM6 SMARCA4 CHD7 EP300 SP1 CEBPB NANOG PRDM10 LOC100128317 lnc-CD36-9 ENSG00000233491 DDX43P3 lnc-HGF-4
GH07J081768 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 0.2 -78.3 -78253 3.3 CTCF MXI1 ZNF384 SPI1 ZNF335 BMI1 FOXP2 RCOR1 ZNF398 RAD21 HGF ENSG00000233491 LOC100128317
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100128317 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128317 gene promoter:
  • AML1a
  • CUTL1
  • ITF-2
  • POU2F1
  • POU2F1a
  • POU2F1b
  • POU2F1c
  • Tal-1beta

Genomic Locations for LOC100128317 Gene

Genomic Locations for LOC100128317 Gene
chr7:81,576,386-81,691,406
(GRCh38/hg38)
Size:
115,021 bases
Orientation:
Minus strand

Genomic View for LOC100128317 Gene

Genes around LOC100128317 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128317 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128317 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128317 Gene

Proteins for LOC100128317 Gene

Post-translational modifications for LOC100128317 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128317 Gene

Domains & Families for LOC100128317 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100128317 Gene

Function for LOC100128317 Gene

Phenotypes From GWAS Catalog for LOC100128317 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128317 Gene

Localization for LOC100128317 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128317 Gene

Pathways & Interactions for LOC100128317 Gene

PathCards logo

SuperPathways for LOC100128317 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100128317 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100128317 Gene

Drugs & Compounds for LOC100128317 Gene

No Compound Related Data Available

Transcripts for LOC100128317 Gene

mRNA/cDNA for LOC100128317 Gene

4 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 NONCODE transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128317 Gene

No ASD Table

Relevant External Links for LOC100128317 Gene

GeneLoc Exon Structure for
LOC100128317

Expression for LOC100128317 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100128317 Gene

genes like me logo Genes that share expression patterns with LOC100128317: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128317 Gene

Orthologs for LOC100128317 Gene

No data available for Orthologs and Evolution for LOC100128317 Gene

Paralogs for LOC100128317 Gene

No data available for Paralogs for LOC100128317 Gene

Variants for LOC100128317 Gene

Additional dbSNP identifiers (rs#s) for LOC100128317 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128317 Gene

Disorders for LOC100128317 Gene

Additional Disease Information for LOC100128317

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)

No disorders were found for LOC100128317 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128317 Gene

Publications for LOC100128317 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 41 54
  2. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. (PMID: 15790807) Cheng J … Gingeras TR (Science (New York, N.Y.) 2005) 3 54

No data available for Mastermind for LOC100128317 Gene

Products for LOC100128317 Gene

Sources for LOC100128317 Gene