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Aliases for LOC100128317 Gene

Subcategory (RNA class) for LOC100128317 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100128317 Gene

  • Uncharacterized LOC100128317 3
  • AC008163.1 5

External Ids for LOC100128317 Gene

Previous GeneCards Identifiers for LOC100128317 Gene

  • GC07U902315
  • GC07M080939
  • GC07M081102
  • GC07M081576

Summaries for LOC100128317 Gene

GeneCards Summary for LOC100128317 Gene

LOC100128317 (Uncharacterized LOC100128317) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128317 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128317 Gene

Genomics for LOC100128317 Gene

GeneHancer (GH) Regulatory Elements for LOC100128317 Gene

Promoters and enhancers for LOC100128317 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J081689 Enhancer 0.8 ENCODE dbSUPER 650.7 -0.4 -408 3.7 ZNF189 ZSCAN4 JUNB EBF1 DPF2 BATF HIC1 ZNF664 ZFHX2 BCL11A LOC100128317 SEMA3C HGF
GH07J081684 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +6.1 6123 2.4 HDGF PKNOX1 SMAD1 SIN3A YBX1 IRF4 BRCA1 ATF7 FOS RUNX3 LOC100128317 DDX43P3
GH07J081768 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 0.2 -78.3 -78285 3.3 ZNF335 CTCF TAF1 RCOR1 ZNF398 BMI1 MNT HGF LOC100128317
GH07J081672 Enhancer 0.7 ENCODE dbSUPER 0.4 +18.1 18055 1.7 OSR2 PRDM6 NANOG POLR2A MZF1 PRDM10 EZH2 LOC100128317 DDX43P3
GH07J081676 Enhancer 0.6 Ensembl dbSUPER 0.4 +14.6 14605 0.4 EBF1 MEF2B LOC100128317 DDX43P3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128317 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128317 gene promoter:
  • ITF-2
  • Tal-1beta
  • POU2F1a
  • POU2F1
  • CUTL1
  • AML1a
  • POU2F1b
  • POU2F1c

Genomic Locations for LOC100128317 Gene

Genomic Locations for LOC100128317 Gene
chr7:81,489,204-81,691,406
(GRCh38/hg38)
Size:
202,203 bases
Orientation:
Minus strand
chr7:81,205,702-81,255,532
(GRCh37/hg19)
Size:
49,831 bases
Orientation:
Minus strand

Genomic View for LOC100128317 Gene

Genes around LOC100128317 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128317 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128317 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128317 Gene

Proteins for LOC100128317 Gene

Post-translational modifications for LOC100128317 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128317 Gene

Domains & Families for LOC100128317 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128317 Gene

Function for LOC100128317 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128317 Gene

Localization for LOC100128317 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128317 Gene

Pathways & Interactions for LOC100128317 Gene

SuperPathways for LOC100128317 Gene

No Data Available

Interacting Proteins for LOC100128317 Gene

Gene Ontology (GO) - Biological Process for LOC100128317 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128317 Gene

Drugs & Compounds for LOC100128317 Gene

No Compound Related Data Available

Transcripts for LOC100128317 Gene

mRNA/cDNA for LOC100128317 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128317 Gene

No ASD Table

Relevant External Links for LOC100128317 Gene

GeneLoc Exon Structure for
LOC100128317

Expression for LOC100128317 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128317 Gene

genes like me logo Genes that share expression patterns with LOC100128317: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128317 Gene

Orthologs for LOC100128317 Gene

Evolution for LOC100128317 Gene

ENSEMBL:
Gene Tree for LOC100128317 (if available)
TreeFam:
Gene Tree for LOC100128317 (if available)

No data available for Orthologs for LOC100128317 Gene

Paralogs for LOC100128317 Gene

No data available for Paralogs for LOC100128317 Gene

Variants for LOC100128317 Gene

Sequence variations from dbSNP and Humsavar for LOC100128317 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000006896 -- 81,605,591(-) G/C intron_variant
rs1000018653 -- 81,598,629(-) T/G intron_variant
rs1000035525 -- 81,692,012(-) A/G upstream_transcript_variant
rs1000113850 -- 81,599,552(-) G/A intron_variant
rs1000180457 -- 81,666,584(-) A/G genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128317 Gene

Disorders for LOC100128317 Gene

Additional Disease Information for LOC100128317

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LOC100128317 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128317 Gene

Publications for LOC100128317 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58
  2. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. (PMID: 15790807) Cheng J … Gingeras TR (Science (New York, N.Y.) 2005) 3 58

Products for LOC100128317 Gene

Sources for LOC100128317 Gene

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