Aliases for LOC100128288 Gene

Subcategory (RNA class) for LOC100128288 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for LOC100128288 Gene

  • Uncharacterized LOC100128288 3
  • Lnc-KRBA2-2 168

External Ids for LOC100128288 Gene

Previous GeneCards Identifiers for LOC100128288 Gene

  • GC17U900959
  • GC17M008202
  • GC17M008261

Summaries for LOC100128288 Gene

GeneCards Summary for LOC100128288 Gene

LOC100128288 (Uncharacterized LOC100128288) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100128288 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100128288 Gene

Genomics for LOC100128288 Gene

GeneHancer (GH) Regulatory Elements for LOC100128288 Gene

Promoters and enhancers for LOC100128288 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J008359 Enhancer 0.9 Ensembl ENCODE 500.7 -0.2 -160 5.8 FOS CTBP1 FOSL1 CEBPG POLR2A PBX2 TCF12 NFE2 FOXA1 ZNF335 LOC100128288 ODF4 RPL26 ENSG00000212206 ENSG00000226871 RNF222 NDEL1 piR-57133-247 KRBA2 RF00017-2272
GH17J008353 Enhancer 0.2 Ensembl 0.4 +6.1 6140 1.6 piR-41245-102 KRBA2 ODF4 ENSG00000226871 RNF222 ENSG00000212206 NDEL1 LOC100128288 RF00017-2272
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100128288 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128288 gene promoter:
  • AML1a
  • C/EBPbeta
  • E47
  • FOXO1
  • FOXO1a
  • FOXO4
  • HOXA3
  • IRF-7A
  • Nkx6-1
  • Tal-1beta

Genomic Locations for LOC100128288 Gene

Genomic Locations for LOC100128288 Gene
chr17:8,358,413-8,360,541
(GRCh38/hg38)
Size:
2,129 bases
Orientation:
Minus strand
chr17:8,261,731-8,263,859
(GRCh37/hg19)
Size:
2,129 bases
Orientation:
Minus strand

Genomic View for LOC100128288 Gene

Genes around LOC100128288 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128288 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128288 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128288 Gene

Proteins for LOC100128288 Gene

Post-translational modifications for LOC100128288 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128288 Gene

Domains & Families for LOC100128288 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100128288 Gene

Function for LOC100128288 Gene

Phenotypes From GWAS Catalog for LOC100128288 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128288 Gene

Localization for LOC100128288 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128288 Gene

Pathways & Interactions for LOC100128288 Gene

PathCards logo

SuperPathways for LOC100128288 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100128288 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100128288 Gene

Drugs & Compounds for LOC100128288 Gene

No Compound Related Data Available

Transcripts for LOC100128288 Gene

mRNA/cDNA for LOC100128288 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128288 Gene

No ASD Table

Relevant External Links for LOC100128288 Gene

GeneLoc Exon Structure for
LOC100128288

Expression for LOC100128288 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100128288 Gene

mRNA expression in normal human tissues for LOC100128288 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100128288

SOURCE GeneReport for Unigene cluster for LOC100128288 Gene:

Hs.549913
genes like me logo Genes that share expression patterns with LOC100128288: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128288 Gene

Orthologs for LOC100128288 Gene

No data available for Orthologs and Evolution for LOC100128288 Gene

Paralogs for LOC100128288 Gene

No data available for Paralogs for LOC100128288 Gene

Variants for LOC100128288 Gene

Additional dbSNP identifiers (rs#s) for LOC100128288 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100128288 Gene

Variant ID Type Subtype PubMed ID
esv3639885 CNV loss 21293372

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100128288 Gene

Disorders for LOC100128288 Gene

No disorders were found for LOC100128288 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100128288 Gene

Publications for LOC100128288 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LOC100128288 Gene

Products for LOC100128288 Gene

Sources for LOC100128288 Gene