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Aliases for LOC100128284 Gene

Subcategory (RNA class) for LOC100128284 Gene

lncRNA

Aliases for LOC100128284 Gene

  • Nipsnap Homolog 1 (C. Elegans) Pseudogene 3
  • Glioblastoma Amplified Sequence Pseudogene 3
  • AC006236.1 5

External Ids for LOC100128284 Gene

ORGUL Members for LOC100128284 Gene

Previous GeneCards Identifiers for LOC100128284 Gene

  • GC17U900891
  • GC17P005574

Summaries for LOC100128284 Gene

GeneCards Summary for LOC100128284 Gene

LOC100128284 (Nipsnap Homolog 1 (C. Elegans) Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100128284 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128284 Gene

Genomics for LOC100128284 Gene

GeneHancer (GH) Regulatory Elements for LOC100128284 Gene

Promoters and enhancers for LOC100128284 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J005769 Enhancer 0.7 Ensembl ENCODE 0.3 +40.1 40078 1.7 ZFHX2 GLIS1 SCRT2 ZIC2 LOC339166 XAF1 LOC100128284
GH17J005711 Enhancer 0.4 ENCODE 0.4 -18.7 -18693 0.2 POLR2A EZH2 LOC100128284 NLRP1
GH17J005717 Enhancer 0.4 ENCODE 0.4 -12.4 -12413 0.2 CTBP1 FOSL2 MAFK LOC100128284 NLRP1
GH17J005758 Enhancer 0.5 ENCODE 0.3 +28.6 28584 0.2 SP1 PKNOX1 DDX20 NFYB NFYC ASH1L FOS NUP88 ZNF232 INCA1 LOC339166 LOC100128284
GH17J005706 Enhancer 0.5 ENCODE 0.3 -23.3 -23263 0.2 CTCF XRCC5 SMC3 ZNF143 REST RAD21 SPI1 LOC100128284 NLRP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128284 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100128284 Gene

Genomic Locations for LOC100128284 Gene
chr17:5,730,289-5,731,808
(GRCh38/hg38)
Size:
1,520 bases
Orientation:
Plus strand
chr17:5,633,517-5,635,128
(GRCh37/hg19)
Size:
1,612 bases
Orientation:
Plus strand

Genomic View for LOC100128284 Gene

Genes around LOC100128284 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128284 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128284 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128284 Gene

Proteins for LOC100128284 Gene

Post-translational modifications for LOC100128284 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128284 Gene

Domains & Families for LOC100128284 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128284 Gene

Function for LOC100128284 Gene

Phenotypes From GWAS Catalog for LOC100128284 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128284 Gene

Localization for LOC100128284 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128284 Gene

Pathways & Interactions for LOC100128284 Gene

SuperPathways for LOC100128284 Gene

No Data Available

Interacting Proteins for LOC100128284 Gene

Gene Ontology (GO) - Biological Process for LOC100128284 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128284 Gene

Drugs & Compounds for LOC100128284 Gene

No Compound Related Data Available

Transcripts for LOC100128284 Gene

mRNA/cDNA for LOC100128284 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128284 Gene

No ASD Table

Relevant External Links for LOC100128284 Gene

GeneLoc Exon Structure for
LOC100128284

Expression for LOC100128284 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128284 Gene

genes like me logo Genes that share expression patterns with LOC100128284: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128284 Gene

Orthologs for LOC100128284 Gene

Evolution for LOC100128284 Gene

ENSEMBL:
Gene Tree for LOC100128284 (if available)
TreeFam:
Gene Tree for LOC100128284 (if available)

No data available for Orthologs for LOC100128284 Gene

Paralogs for LOC100128284 Gene

No data available for Paralogs for LOC100128284 Gene

Variants for LOC100128284 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128284 Gene

Disorders for LOC100128284 Gene

No disorders were found for LOC100128284 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100128284 Gene

Publications for LOC100128284 Gene

No publications were found for LOC100128284 Gene.

Products for LOC100128284 Gene

Sources for LOC100128284 Gene

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