Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100128239 Gene

Subcategory (RNA class) for LOC100128239 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100128239 Gene

  • Uncharacterized LOC100128239 3
  • AP000911.1 5

External Ids for LOC100128239 Gene

Previous GeneCards Identifiers for LOC100128239 Gene

  • GC11P133408
  • GC11P133903

Summaries for LOC100128239 Gene

GeneCards Summary for LOC100128239 Gene

LOC100128239 (Uncharacterized LOC100128239) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128239 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128239 Gene

Genomics for LOC100128239 Gene

GeneHancer (GH) Regulatory Elements for LOC100128239 Gene

Promoters and enhancers for LOC100128239 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J134032 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 658.9 +1.6 1612 3.3 KLF17 ZNF335 RCOR1 ATF7 EGR2 SP3 ZNF398 ZEB2 GLIS1 ZNF341 LOC100128239 LOC105369582
GH11J134036 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 8.7 +6.0 5973 4 PKNOX1 SIN3A YY1 ZNF335 GLIS2 EGR1 KLF13 EGR2 SP3 SP5 LOC105369582 IGSF9B JAM3 GLB1L3 LOC100128239
GH11J134868 Enhancer 0.9 ENCODE 14.1 +836.5 836520 0.2 HDAC1 ZNF473 ZSCAN4 ZNF133 SIN3A RAD21 ZEB1 GATA2 ZNF366 ZNF143 LOC100128239 THYN1 GC11P134876 GC11P134832
GH11J134003 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 5.4 -28.1 -28057 1.3 CREB1 ATF7 ATF2 LOC100128239 B3GAT1 ENSG00000255406 GC11P133977
GH11J134020 Enhancer 0.4 dbSUPER 6.8 -10.9 -10896 1.6 ZFHX2 EGR2 LOC100128239 LOC105369582 ENSG00000255406 GC11P133977
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128239 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128239 gene promoter:
  • ARP-1
  • USF1
  • USF-1
  • Tal-1beta
  • E47
  • CUTL1
  • CREB
  • Pax-2
  • Pax-2b
  • Pax-2a

Genomic Locations for LOC100128239 Gene

Genomic Locations for LOC100128239 Gene
chr11:134,032,272-134,046,849
(GRCh38/hg38)
Size:
14,578 bases
Orientation:
Plus strand
chr11:133,902,167-133,916,744
(GRCh37/hg19)
Size:
14,578 bases
Orientation:
Plus strand

Genomic View for LOC100128239 Gene

Genes around LOC100128239 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128239 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128239 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128239 Gene

Proteins for LOC100128239 Gene

Post-translational modifications for LOC100128239 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128239 Gene

Domains & Families for LOC100128239 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128239 Gene

Function for LOC100128239 Gene

Phenotypes From GWAS Catalog for LOC100128239 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128239 Gene

Localization for LOC100128239 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128239 Gene

Pathways & Interactions for LOC100128239 Gene

SuperPathways for LOC100128239 Gene

No Data Available

Interacting Proteins for LOC100128239 Gene

Gene Ontology (GO) - Biological Process for LOC100128239 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128239 Gene

Drugs & Compounds for LOC100128239 Gene

No Compound Related Data Available

Transcripts for LOC100128239 Gene

mRNA/cDNA for LOC100128239 Gene

(4) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

Unigene Clusters for LOC100128239 Gene

Uncharacterized LOC100128239:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128239 Gene

No ASD Table

Relevant External Links for LOC100128239 Gene

GeneLoc Exon Structure for
LOC100128239

Expression for LOC100128239 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128239 Gene

Protein differential expression in normal tissues from HIPED for LOC100128239 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for LOC100128239 Gene



Protein tissue co-expression partners for LOC100128239 Gene

- Elite partner

SOURCE GeneReport for Unigene cluster for LOC100128239 Gene:

Hs.423734
genes like me logo Genes that share expression patterns with LOC100128239: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128239 Gene

Orthologs for LOC100128239 Gene

Evolution for LOC100128239 Gene

ENSEMBL:
Gene Tree for LOC100128239 (if available)
TreeFam:
Gene Tree for LOC100128239 (if available)

No data available for Orthologs for LOC100128239 Gene

Paralogs for LOC100128239 Gene

No data available for Paralogs for LOC100128239 Gene

Variants for LOC100128239 Gene

Sequence variations from dbSNP and Humsavar for LOC100128239 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000223896 -- 134,035,244(+) G/A/C intron_variant
rs1000268755 -- 134,041,442(+) C/T downstream_transcript_variant
rs1000434301 -- 134,032,978(+) C/T intron_variant
rs1000458089 -- 134,041,539(+) G/A downstream_transcript_variant
rs1000825897 -- 134,034,119(+) G/C intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128239 Gene

Disorders for LOC100128239 Gene

Additional Disease Information for LOC100128239

No disorders were found for LOC100128239 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128239 Gene

Publications for LOC100128239 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100128239 Gene

Sources for LOC100128239 Gene

Content
Loading form....