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Aliases for LOC100128164 Gene

Aliases for LOC100128164 Gene

  • Four And A Half LIM Domains 1 Pseudogene 3

External Ids for LOC100128164 Gene

Previous GeneCards Identifiers for LOC100128164 Gene

  • GC03U901097
  • GC03M171144
  • GC03M169672
  • GC03M169661

Summaries for LOC100128164 Gene

GeneCards Summary for LOC100128164 Gene

LOC100128164 (Four And A Half LIM Domains 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100128164 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128164 Gene

Genomics for LOC100128164 Gene

GeneHancer (GH) Regulatory Elements for LOC100128164 Gene

Promoters and enhancers for LOC100128164 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J169964 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 650.7 -0.2 -213 3.9 PKNOX1 SMAD1 FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ENSG00000239219 LOC100128164 SEC62 MYNN SEC62-AS1 LRRC31 GPR160 PHC3 RPL22L1
GH03J169953 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +12.4 12426 1.9 BATF ZNF644 IRF4 RELA ZNF766 POLR2A VEZF1 EED ATF7 ETV6 ENSG00000239219 LRRC31 SAMD7 LRRC34 LRRIQ4 GPR160 ENSG00000244193 LOC100128164 SEC62
GH03J169944 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +21.2 21191 2.3 PKNOX1 ATF1 ARNT IRF4 ZNF143 ATF7 RUNX3 JUNB ZNF592 ATF4 ENSG00000244193 ENSG00000239219 SEC62 LRRC31 GPR160 SAMD7 LRRC34 LRRIQ4 GC03P169939 LOC100128164
GH03J169952 Enhancer 0.8 FANTOM5 Ensembl dbSUPER 0.4 +14.3 14251 0.6 ATF2 SKIL LRRC31 SAMD7 LRRC34 LRRIQ4 SEC62 ENSG00000244193 LOC100128164 ENSG00000239219
GH03J169979 Enhancer 0.8 ENCODE dbSUPER 0.4 -13.4 -13369 1.1 FOXA2 RXRA CEBPB ATF2 SP1 JUND ATF3 EGR1 CEBPA CREB1 ENSG00000239219 SEC62-AS1 SEC62 LOC100128164
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128164 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128164 gene promoter:
  • TBP
  • Nkx6-1
  • Chx10
  • AML1a
  • RSRFC4
  • SRY
  • aMEF-2
  • MEF-2A
  • Pax-3
  • COUP

Genomic Locations for LOC100128164 Gene

Genomic Locations for LOC100128164 Gene
chr3:169,943,984-169,966,734
(GRCh38/hg38)
Size:
22,751 bases
Orientation:
Minus strand
chr3:169,657,141-169,684,522
(GRCh37/hg19)
Size:
27,382 bases
Orientation:
Minus strand

Genomic View for LOC100128164 Gene

Genes around LOC100128164 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128164 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128164 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128164 Gene

Proteins for LOC100128164 Gene

Post-translational modifications for LOC100128164 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128164 Gene

Domains & Families for LOC100128164 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128164 Gene

Function for LOC100128164 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128164 Gene

Localization for LOC100128164 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128164 Gene

Pathways & Interactions for LOC100128164 Gene

SuperPathways for LOC100128164 Gene

No Data Available

Interacting Proteins for LOC100128164 Gene

Gene Ontology (GO) - Biological Process for LOC100128164 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128164 Gene

Drugs & Compounds for LOC100128164 Gene

No Compound Related Data Available

Transcripts for LOC100128164 Gene

mRNA/cDNA for LOC100128164 Gene

(4) Additional mRNA sequences :

Unigene Clusters for LOC100128164 Gene

Four and a half LIM domains 1 pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128164 Gene

No ASD Table

Relevant External Links for LOC100128164 Gene

GeneLoc Exon Structure for
LOC100128164

Expression for LOC100128164 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128164 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100128164 Gene

This gene is overexpressed in Testis (x26.7).

SOURCE GeneReport for Unigene cluster for LOC100128164 Gene:

Hs.633070
genes like me logo Genes that share expression patterns with LOC100128164: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128164 Gene

Orthologs for LOC100128164 Gene

No data available for Orthologs and Evolution for LOC100128164 Gene

Paralogs for LOC100128164 Gene

No data available for Paralogs for LOC100128164 Gene

Variants for LOC100128164 Gene

Sequence variations from dbSNP and Humsavar for LOC100128164 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000086501 -- 169,951,547(-) T/C genic_downstream_transcript_variant, intron_variant
rs1000109551 -- 169,954,459(-) G/A intron_variant, non_coding_transcript_variant
rs1000335840 -- 169,968,415(-) A/G upstream_transcript_variant
rs1000451966 -- 169,967,995(-) A/G upstream_transcript_variant
rs1000673078 -- 169,967,013(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100128164 Gene

Variant ID Type Subtype PubMed ID
nsv7356 OTHER inversion 18451855
nsv521906 CNV gain 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100128164 Gene

Disorders for LOC100128164 Gene

Additional Disease Information for LOC100128164

No disorders were found for LOC100128164 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128164 Gene

Publications for LOC100128164 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100128164 Gene

Sources for LOC100128164 Gene

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