Aliases for LOC100128079 Gene

Subcategory (RNA class) for LOC100128079 Gene

lncRNA

Number of RNA Genes sources:

0 / 14

Aliases for LOC100128079 Gene

  • Uncharacterized LOC100128079 3
  • CTD-2049O4.1 3

External Ids for LOC100128079 Gene

Previous GeneCards Identifiers for LOC100128079 Gene

  • GC16U900814
  • GC16M027604

Summaries for LOC100128079 Gene

GeneCards Summary for LOC100128079 Gene

LOC100128079 (Uncharacterized LOC100128079) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100128079 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100128079 Gene

Genomics for LOC100128079 Gene

GeneHancer (GH) Regulatory Elements for LOC100128079 Gene

Promoters and enhancers for LOC100128079 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J027718 Enhancer 0.9 ENCODE CraniofacialAtlas dbSUPER 500.7 +0.4 437 1.4 ZIC2 MXI1 RCOR1 KDM1A SMARCA4 TFAP4 SOX5 GATA2 BHLHE40 ASH2L ENSG00000261329 LOC100128079 piR-39194 KIAA0556
GH16J027719 Enhancer 0.3 dbSUPER 500.7 -0.9 -929 0.5 FOXA1 FOXP1 ENSG00000261329 LOC100128079 ENSG00000201371 KIAA0556
GH16J027720 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -2.8 -2772 2.6 NR2F2 TCF12 MEF2B BATF EBF1 IKZF1 NR2F1 RCOR1 ZNF792 TFAP4 ENSG00000201371 IL21R-AS1 LOC100128079 KIAA0556
GH16J027703 Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +16.0 16029 4.8 NR2F2 FOS GATA2 JUN TCF7L2 POLR2A CTCF IL21R-AS1 piR-50443-144 piR-39194 ENSG00000261329 LOC100128079 KIAA0556
GH16J027690 Enhancer 0.8 Ensembl dbSUPER 0.3 +27.3 27289 2.1 CTCF USF1 REST RAD21 SMC3 MIER1 MAX ZNF707 MYC ZNF189 IL21R-AS1 KIAA0556 NPIPB8 ENSG00000273553 piR-50443-144 LOC100128079 ENSG00000261329
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100128079 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100128079 Gene

Genomic Locations for LOC100128079 Gene
chr16:27,650,134-27,719,029
(GRCh38/hg38)
Size:
68,896 bases
Orientation:
Minus strand
chr16:27,690,261-27,730,104
(GRCh37/hg19)
Size:
39,844 bases
Orientation:
Minus strand

Genomic View for LOC100128079 Gene

Genes around LOC100128079 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128079 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128079 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128079 Gene

Proteins for LOC100128079 Gene

Post-translational modifications for LOC100128079 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128079 Gene

Domains & Families for LOC100128079 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100128079 Gene

Function for LOC100128079 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128079 Gene

Localization for LOC100128079 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128079 Gene

Pathways & Interactions for LOC100128079 Gene

PathCards logo

SuperPathways for LOC100128079 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100128079 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100128079 Gene

Drugs & Compounds for LOC100128079 Gene

No Compound Related Data Available

Transcripts for LOC100128079 Gene

mRNA/cDNA for LOC100128079 Gene

1 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128079 Gene

No ASD Table

Relevant External Links for LOC100128079 Gene

GeneLoc Exon Structure for
LOC100128079

Expression for LOC100128079 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100128079 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100128079 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.7), Brain - Substantia nigra (x4.6), and Brain - Hippocampus (x4.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100128079

SOURCE GeneReport for Unigene cluster for LOC100128079 Gene:

Hs.656903
genes like me logo Genes that share expression patterns with LOC100128079: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128079 Gene

Orthologs for LOC100128079 Gene

No data available for Orthologs and Evolution for LOC100128079 Gene

Paralogs for LOC100128079 Gene

No data available for Paralogs for LOC100128079 Gene

Variants for LOC100128079 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC100128079 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
714687 Benign: not provided 27,708,722(-) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
720506 Benign: not provided 27,708,902(-) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
740532 Likely Benign: not provided 27,708,785(-) G/A NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for LOC100128079 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128079 Gene

Disorders for LOC100128079 Gene

No disorders were found for LOC100128079 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100128079 Gene

Publications for LOC100128079 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for LOC100128079 Gene

Products for LOC100128079 Gene

Sources for LOC100128079 Gene