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Aliases for LOC100128079 Gene

Subcategory (RNA class) for LOC100128079 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100128079 Gene

  • Uncharacterized LOC100128079 3
  • CTD-2049O4.1 3
  • AC016597.1 5

External Ids for LOC100128079 Gene

Previous GeneCards Identifiers for LOC100128079 Gene

  • GC16U900814
  • GC16M027604

Summaries for LOC100128079 Gene

GeneCards Summary for LOC100128079 Gene

LOC100128079 (Uncharacterized LOC100128079) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128079 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128079 Gene

Genomics for LOC100128079 Gene

GeneHancer (GH) Regulatory Elements for LOC100128079 Gene

Promoters and enhancers for LOC100128079 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J027718 Enhancer 0.7 ENCODE dbSUPER 650.7 +0.3 296 1.1 SOX5 SOX13 TFAP4 RCOR1 KDM1A ZIC2 PIR62239 LOC100128079 KIAA0556
GH16J027719 Enhancer 0.3 dbSUPER 650.7 -0.9 -929 0.5 FOXP1 LOC100128079 ENSG00000201371 GC16M027722 KIAA0556
GH16J027720 Enhancer 1 Ensembl ENCODE dbSUPER 0.7 -2.8 -2773 2.6 TFAP4 NR2F1 HLF MAX EBF1 MEF2B BATF ETV5 NR2F2 IKZF1 ENSG00000201371 GC16M027722 IL21R-AS1 LOC100128079 KIAA0556
GH16J027703 Enhancer 0.6 ENCODE dbSUPER 0.4 +15.3 15264 0.2 JUN NR2F2 PIR62239 LOC100128079 ENSG00000273553 KIAA0556
GH16J027698 Enhancer 0.7 ENCODE dbSUPER 0.3 +20.6 20604 0.1 CTCF CTBP1 ZNF143 REST RAD21 ENSG00000273553 PIR62239 LOC100128079 KIAA0556
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128079 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100128079 Gene

Genomic Locations for LOC100128079 Gene
chr16:27,650,134-27,719,029
(GRCh38/hg38)
Size:
68,896 bases
Orientation:
Minus strand
chr16:27,690,261-27,730,104
(GRCh37/hg19)
Size:
39,844 bases
Orientation:
Minus strand

Genomic View for LOC100128079 Gene

Genes around LOC100128079 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128079 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128079 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128079 Gene

Proteins for LOC100128079 Gene

Post-translational modifications for LOC100128079 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128079 Gene

Domains & Families for LOC100128079 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128079 Gene

Function for LOC100128079 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128079 Gene

Localization for LOC100128079 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128079 Gene

Pathways & Interactions for LOC100128079 Gene

SuperPathways for LOC100128079 Gene

No Data Available

Interacting Proteins for LOC100128079 Gene

Gene Ontology (GO) - Biological Process for LOC100128079 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128079 Gene

Drugs & Compounds for LOC100128079 Gene

No Compound Related Data Available

Transcripts for LOC100128079 Gene

mRNA/cDNA for LOC100128079 Gene

(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Unigene Clusters for LOC100128079 Gene

Uncharacterized LOC100128079:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128079 Gene

No ASD Table

Relevant External Links for LOC100128079 Gene

GeneLoc Exon Structure for
LOC100128079

Expression for LOC100128079 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128079 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100128079 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x5.7), Brain - Substantia nigra (x4.6), and Brain - Hippocampus (x4.1).

SOURCE GeneReport for Unigene cluster for LOC100128079 Gene:

Hs.656903
genes like me logo Genes that share expression patterns with LOC100128079: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128079 Gene

Orthologs for LOC100128079 Gene

Evolution for LOC100128079 Gene

ENSEMBL:
Gene Tree for LOC100128079 (if available)
TreeFam:
Gene Tree for LOC100128079 (if available)

No data available for Orthologs for LOC100128079 Gene

Paralogs for LOC100128079 Gene

No data available for Paralogs for LOC100128079 Gene

Variants for LOC100128079 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128079 Gene

Disorders for LOC100128079 Gene

Additional Disease Information for LOC100128079

No disorders were found for LOC100128079 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128079 Gene

Publications for LOC100128079 Gene

No publications were found for LOC100128079 Gene.

Products for LOC100128079 Gene

Sources for LOC100128079 Gene

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