Aliases for LOC100128076 Gene

Aliases for LOC100128076 Gene

  • Protein Tyrosine Phosphatase Pseudogene 3

External Ids for LOC100128076 Gene

Previous GeneCards Identifiers for LOC100128076 Gene

  • GC09P093936
  • GC09P094895

Summaries for LOC100128076 Gene

GeneCards Summary for LOC100128076 Gene

LOC100128076 (Protein Tyrosine Phosphatase Pseudogene) is a Pseudogene.

Additional gene information for LOC100128076 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100128076 Gene

Genomics for LOC100128076 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100128076 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J092133 Enhancer 1 ENCODE dbSUPER 600.7 +1.4 1354 1.3 HNRNPL CREB1 GATAD2A CTCF ZNF692 TARDBP LARP7 ZNF143 ZSCAN4 REST ENSG00000234537 LINC00475 LOC100128076 lnc-SPTLC1-3 SPTLC1 PRSS47
GH09J092132 Enhancer 0.2 Ensembl 600.7 -0.1 -133 0.2 ENSG00000234537 LOC100128076 LINC00475 lnc-SPTLC1-3 SPTLC1 PRSS47
GH09J092138 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +7.5 7526 4.5 GATAD2A CTCF TEAD4 TFE3 IKZF1 RCOR2 LARP7 ZNF143 RXRB REST LOC112268047 ENSG00000234537 ROR2 SPTLC1 LINC00475 lnc-SPTLC1-3 LOC100128076 PRSS47
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100128076 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100128076 gene promoter:
  • c-Myc
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • LCR-F1
  • Max1
  • ZIC2

Genomic Locations for LOC100128076 Gene

Genomic Locations for LOC100128076 Gene
chr9:92,132,834-92,138,629
(GRCh38/hg38)
Size:
5,796 bases
Orientation:
Plus strand
chr9:94,894,680-94,900,911
(GRCh37/hg19)
Size:
6,232 bases
Orientation:
Plus strand

Genomic View for LOC100128076 Gene

Genes around LOC100128076 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128076 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128076 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128076 Gene

Proteins for LOC100128076 Gene

Post-translational modifications for LOC100128076 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128076 Gene

Domains & Families for LOC100128076 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100128076 Gene

Function for LOC100128076 Gene

Phenotypes From GWAS Catalog for LOC100128076 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128076 Gene

Localization for LOC100128076 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128076 Gene

Pathways & Interactions for LOC100128076 Gene

PathCards logo

SuperPathways for LOC100128076 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100128076 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100128076 Gene

Drugs & Compounds for LOC100128076 Gene

No Compound Related Data Available

Transcripts for LOC100128076 Gene

mRNA/cDNA for LOC100128076 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128076 Gene

No ASD Table

Relevant External Links for LOC100128076 Gene

GeneLoc Exon Structure for
LOC100128076

Expression for LOC100128076 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100128076 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100128076 Gene

This gene is overexpressed in Brain - Cerebellum (x12.7) and Brain - Cerebellar Hemisphere (x10.5).

SOURCE GeneReport for Unigene cluster for LOC100128076 Gene:

Hs.716275
genes like me logo Genes that share expression patterns with LOC100128076: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128076 Gene

Orthologs for LOC100128076 Gene

No data available for Orthologs and Evolution for LOC100128076 Gene

Paralogs for LOC100128076 Gene

No data available for Paralogs for LOC100128076 Gene

Variants for LOC100128076 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100128076 Gene

Variant ID Type Subtype PubMed ID
nsv1046733 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC100128076 Gene

Disorders for LOC100128076 Gene

No disorders were found for LOC100128076 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100128076 Gene

Publications for LOC100128076 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Cloning of hOST-PTP: the only example of a protein-tyrosine-phosphatase the function of which has been lost between rodent and human. (PMID: 15358244) Cousin W … Peraldi P (Biochemical and biophysical research communications 2004) 3
  3. A genomic perspective on protein tyrosine phosphatases: gene structure, pseudogenes, and genetic disease linkage. (PMID: 14718383) Andersen JN … Møller NP (FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2004) 3

No data available for Mastermind for LOC100128076 Gene

Products for LOC100128076 Gene

Sources for LOC100128076 Gene