Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100128076 Gene

Aliases for LOC100128076 Gene

  • Protein Tyrosine Phosphatase Pseudogene 3
  • AL354751.1 5

External Ids for LOC100128076 Gene

Previous GeneCards Identifiers for LOC100128076 Gene

  • GC09P093936
  • GC09P094895

Summaries for LOC100128076 Gene

GeneCards Summary for LOC100128076 Gene

LOC100128076 (Protein Tyrosine Phosphatase Pseudogene) is a Pseudogene.

Additional gene information for LOC100128076 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128076 Gene

Genomics for LOC100128076 Gene

GeneHancer (GH) Regulatory Elements for LOC100128076 Gene

Promoters and enhancers for LOC100128076 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J092133 Enhancer 1.3 Ensembl ENCODE dbSUPER 663 +1.8 1790 1.3 ATF1 NFIB RB1 ZSCAN4 ARID4B KLF14 KLF5 RAD21 GLIS2 ZNF143 LOC100128076 LINC00475 SPTLC1
GH09J092323 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.1 +193.0 193033 3 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 NOL8 CENPP MTND4P15 IARS LINC00475 ZNF484 ENSG00000236115 HSPE1P22 RPL21P82 RPL21P86
GH09J092141 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 11.8 +9.0 9003 0.4 GTF2F1 CTCF MAZ NRF1 SIN3A MNT KLF4 E2F1 MTA1 HSF1 LINC00475 LOC100128076 GC09M092145
GH09J091837 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.1 -293.2 -293186 2.6 ZSCAN4 INSM2 KLF17 MZF1 YBX1 FEZF1 ZNF2 ZNF335 ARID2 ZFP91 NOL8 MTND4P15 LOC100128076 MTCO3P29 ROR2 LOC101927935 GC09P091736
GH09J092138 Enhancer 1.3 Ensembl ENCODE dbSUPER 7.8 +7.1 7107 3 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF48 ZNF143 RXRA LINC00475 LOC100128076 ROR2 SPTLC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128076 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128076 gene promoter:
  • E2F-3a
  • E2F-1
  • E2F-2
  • ZIC2
  • E2F-4
  • E2F-5
  • c-Myc
  • Max1
  • LCR-F1
  • E2F

Genomic Locations for LOC100128076 Gene

Genomic Locations for LOC100128076 Gene
chr9:92,132,398-92,138,629
(GRCh38/hg38)
Size:
6,232 bases
Orientation:
Plus strand
chr9:94,894,680-94,900,911
(GRCh37/hg19)
Size:
6,232 bases
Orientation:
Plus strand

Genomic View for LOC100128076 Gene

Genes around LOC100128076 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128076 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128076 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128076 Gene

Proteins for LOC100128076 Gene

Post-translational modifications for LOC100128076 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128076 Gene

Domains & Families for LOC100128076 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128076 Gene

Function for LOC100128076 Gene

Phenotypes From GWAS Catalog for LOC100128076 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128076 Gene

Localization for LOC100128076 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128076 Gene

Pathways & Interactions for LOC100128076 Gene

SuperPathways for LOC100128076 Gene

No Data Available

Interacting Proteins for LOC100128076 Gene

Gene Ontology (GO) - Biological Process for LOC100128076 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128076 Gene

Drugs & Compounds for LOC100128076 Gene

No Compound Related Data Available

Transcripts for LOC100128076 Gene

mRNA/cDNA for LOC100128076 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100128076 Gene

Protein tyrosine phosphatase pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128076 Gene

No ASD Table

Relevant External Links for LOC100128076 Gene

GeneLoc Exon Structure for
LOC100128076

Expression for LOC100128076 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128076 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100128076 Gene

This gene is overexpressed in Brain - Cerebellum (x12.7) and Brain - Cerebellar Hemisphere (x10.5).

SOURCE GeneReport for Unigene cluster for LOC100128076 Gene:

Hs.716275
genes like me logo Genes that share expression patterns with LOC100128076: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128076 Gene

Orthologs for LOC100128076 Gene

Evolution for LOC100128076 Gene

ENSEMBL:
Gene Tree for LOC100128076 (if available)
TreeFam:
Gene Tree for LOC100128076 (if available)

No data available for Orthologs for LOC100128076 Gene

Paralogs for LOC100128076 Gene

No data available for Paralogs for LOC100128076 Gene

Variants for LOC100128076 Gene

Sequence variations from dbSNP and Humsavar for LOC100128076 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000997673 -- 92,135,972(+) G/T intron_variant
rs1001261458 -- 92,136,301(+) GG/G non_coding_transcript_variant
rs1002129138 -- 92,135,464(+) G/T non_coding_transcript_variant
rs1003639238 -- 92,137,570(+) A/ non_coding_transcript_variant
rs1003669046 -- 92,137,929(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100128076 Gene

Variant ID Type Subtype PubMed ID
nsv1046733 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100128076 Gene

Disorders for LOC100128076 Gene

Additional Disease Information for LOC100128076

No disorders were found for LOC100128076 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128076 Gene

Publications for LOC100128076 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. A genomic perspective on protein tyrosine phosphatases: gene structure, pseudogenes, and genetic disease linkage. (PMID: 14718383) Andersen JN … Møller NP (FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2004) 3 58
  3. Cloning of hOST-PTP: the only example of a protein-tyrosine-phosphatase the function of which has been lost between rodent and human. (PMID: 15358244) Cousin W … Peraldi P (Biochemical and biophysical research communications 2004) 3 58

Products for LOC100128076 Gene

Sources for LOC100128076 Gene

Content
Loading form....