Aliases for LOC100128007 Gene

Aliases for LOC100128007 Gene

  • Spi-C Transcription Factor (Spi-1/PU.1 Related) Pseudogene 3

External Ids for LOC100128007 Gene

Previous GeneCards Identifiers for LOC100128007 Gene

  • GC17U900855
  • GC17M006771
  • GC17M006830
  • GC17M006931

Summaries for LOC100128007 Gene

GeneCards Summary for LOC100128007 Gene

LOC100128007 (Spi-C Transcription Factor (Spi-1/PU.1 Related) Pseudogene) is a Pseudogene.

Additional gene information for LOC100128007 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100128007 Gene

Genomics for LOC100128007 Gene

GeneHancer (GH) Regulatory Elements for LOC100128007 Gene

Promoters and enhancers for LOC100128007 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J006926 Enhancer 0.7 Ensembl 500.7 +0.6 627 1.6 EP300 MYNN TRIM24 FOS CEBPG CEBPB POLR2H JUN NFE2 FOSL1 ENSG00000262503 LOC100128007 lnc-TEKT1-6 ALOX12 ALOX12-AS1 RNASEK RNASEK-C17orf49 BCL6B SLC13A5 lnc-ALOX12-4
GH17J006936 Enhancer 0.7 FANTOM5 ENCODE 0.4 -8.5 -8481 0.8 NFYB PRDM10 ZBTB33 SPI1 RFX5 POLR2A PKNOX1 lnc-SLC16A11-6 SLC13A5 XAF1 ACAP1 EIF5A GABARAP GPS2 RNASEK C17orf49 LOC100128007
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100128007 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128007 gene promoter:
  • c-Myb
  • NCX
  • Nkx2-5
  • POU2F1
  • POU2F1a
  • POU2F2
  • POU2F2 (Oct-2.1)
  • POU2F2B
  • POU2F2C
  • YY1

Genomic Locations for LOC100128007 Gene

Genomic Locations for LOC100128007 Gene
chr17:6,927,417-6,928,228
(GRCh38/hg38)
Size:
812 bases
Orientation:
Minus strand
chr17:6,830,791-6,831,521
(GRCh37/hg19)
Size:
731 bases
Orientation:
Minus strand

Genomic View for LOC100128007 Gene

Genes around LOC100128007 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128007 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128007 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128007 Gene

Proteins for LOC100128007 Gene

Post-translational modifications for LOC100128007 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128007 Gene

Domains & Families for LOC100128007 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100128007 Gene

Function for LOC100128007 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128007 Gene

Localization for LOC100128007 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128007 Gene

Pathways & Interactions for LOC100128007 Gene

PathCards logo

SuperPathways for LOC100128007 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100128007 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100128007 Gene

Drugs & Compounds for LOC100128007 Gene

No Compound Related Data Available

Transcripts for LOC100128007 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128007 Gene

No ASD Table

Relevant External Links for LOC100128007 Gene

GeneLoc Exon Structure for
LOC100128007

No data available for mRNA/cDNA for LOC100128007 Gene

Expression for LOC100128007 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100128007 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100128007 Gene

This gene is overexpressed in Pituitary (x13.9), Liver (x5.3), and Thyroid (x4.7).
genes like me logo Genes that share expression patterns with LOC100128007: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128007 Gene

Orthologs for LOC100128007 Gene

No data available for Orthologs and Evolution for LOC100128007 Gene

Paralogs for LOC100128007 Gene

No data available for Paralogs for LOC100128007 Gene

Variants for LOC100128007 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128007 Gene

Disorders for LOC100128007 Gene

No disorders were found for LOC100128007 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100128007 Gene

Publications for LOC100128007 Gene

No publications were found for LOC100128007 Gene.

No data available for Mastermind for LOC100128007 Gene

Products for LOC100128007 Gene

Sources for LOC100128007 Gene