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Aliases for LOC100128007 Gene

Aliases for LOC100128007 Gene

  • Spi-C Transcription Factor (Spi-1/PU.1 Related) Pseudogene 3
  • AC027763.1 5

External Ids for LOC100128007 Gene

Previous GeneCards Identifiers for LOC100128007 Gene

  • GC17U900855
  • GC17M006771
  • GC17M006830

Summaries for LOC100128007 Gene

GeneCards Summary for LOC100128007 Gene

LOC100128007 (Spi-C Transcription Factor (Spi-1/PU.1 Related) Pseudogene) is a Pseudogene.

Additional gene information for LOC100128007 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128007 Gene

Genomics for LOC100128007 Gene

GeneHancer (GH) Regulatory Elements for LOC100128007 Gene

Promoters and enhancers for LOC100128007 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J006936 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 -8.5 -8472 1 PKNOX1 POLR2A NFYB ZBTB33 PRDM10 SPI1 SLC13A5 XAF1 ACAP1 EIF5A GABARAP GPS2 RNASEK C17orf49 LOC100128007 GC17M006958
GH17J006940 Enhancer 0.7 Ensembl 0.4 -12.3 -12312 0.5 HDAC1 GTF2F1 IRF2 NFATC3 GTF2E2 ZBTB40 E4F1 POLR2B MTA3 POLR2A ENSG00000262089 EIF4A1 SNORD10 CNTROB POLR2A TP53 DVL2 SNORA48 LOC100128007 GC17M006958
GH17J006948 Enhancer 0.7 FANTOM5 Ensembl 0.3 -20.5 -20548 0.5 POLR2A MAX MGA XAF1 RNASEK GABARAP GC17M006958 LOC100128007 ALOX12-AS1 ALOX12P2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128007 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128007 gene promoter:
  • YY1
  • Nkx2-5
  • NCX
  • c-Myb
  • POU2F2C
  • POU2F2B
  • POU2F2 (Oct-2.1)
  • POU2F2
  • POU2F1a
  • POU2F1

Genomic Locations for LOC100128007 Gene

Genomic Locations for LOC100128007 Gene
chr17:6,927,417-6,928,228
(GRCh38/hg38)
Size:
812 bases
Orientation:
Minus strand
chr17:6,830,791-6,831,521
(GRCh37/hg19)
Size:
731 bases
Orientation:
Minus strand

Genomic View for LOC100128007 Gene

Genes around LOC100128007 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128007 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128007 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128007 Gene

Proteins for LOC100128007 Gene

Post-translational modifications for LOC100128007 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128007 Gene

Domains & Families for LOC100128007 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128007 Gene

Function for LOC100128007 Gene

Phenotypes From GWAS Catalog for LOC100128007 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128007 Gene

Localization for LOC100128007 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128007 Gene

Pathways & Interactions for LOC100128007 Gene

SuperPathways for LOC100128007 Gene

No Data Available

Interacting Proteins for LOC100128007 Gene

Gene Ontology (GO) - Biological Process for LOC100128007 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128007 Gene

Drugs & Compounds for LOC100128007 Gene

No Compound Related Data Available

Transcripts for LOC100128007 Gene

mRNA/cDNA for LOC100128007 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128007 Gene

No ASD Table

Relevant External Links for LOC100128007 Gene

GeneLoc Exon Structure for
LOC100128007

Expression for LOC100128007 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128007 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100128007 Gene

This gene is overexpressed in Pituitary (x13.9), Liver (x5.3), and Thyroid (x4.7).
genes like me logo Genes that share expression patterns with LOC100128007: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128007 Gene

Orthologs for LOC100128007 Gene

Evolution for LOC100128007 Gene

ENSEMBL:
Gene Tree for LOC100128007 (if available)
TreeFam:
Gene Tree for LOC100128007 (if available)

No data available for Orthologs for LOC100128007 Gene

Paralogs for LOC100128007 Gene

No data available for Paralogs for LOC100128007 Gene

Variants for LOC100128007 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100128007 Gene

Disorders for LOC100128007 Gene

No disorders were found for LOC100128007 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100128007 Gene

Publications for LOC100128007 Gene

No publications were found for LOC100128007 Gene.

Products for LOC100128007 Gene

Sources for LOC100128007 Gene

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