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Aliases for LOC100128006 Gene

Subcategory (RNA class) for LOC100128006 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100128006 Gene

  • Uncharacterized LOC100128006 3
  • AC005358.2 5

External Ids for LOC100128006 Gene

Previous GeneCards Identifiers for LOC100128006 Gene

  • GC17U900988
  • GC17M012604

Summaries for LOC100128006 Gene

GeneCards Summary for LOC100128006 Gene

LOC100128006 (Uncharacterized LOC100128006) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100128006 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100128006 Gene

Genomics for LOC100128006 Gene

GeneHancer (GH) Regulatory Elements for LOC100128006 Gene

Promoters and enhancers for LOC100128006 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J012788 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 650.7 +0.5 525 1.7 RB1 KLF17 SIN3A ZNF2 KLF5 ZNF48 ETS1 ZNF335 ZNF366 SCRT2 LOC100128006 ARHGAP44
GH17J012791 Enhancer 0.4 Ensembl 650.7 -0.8 -817 0.2 KLF1 EBF1 ZNF18 LOC100128006 ARHGAP44 GC17P012798
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100128006 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100128006 gene promoter:
  • RORalpha2
  • HFH-3
  • FOXI1
  • Gfi-1
  • Arnt
  • CREB
  • deltaCREB
  • Max1
  • FOXO1
  • FOXO1a

Genomic Locations for LOC100128006 Gene

Genomic Locations for LOC100128006 Gene
chr17:12,760,134-12,790,284
(GRCh38/hg38)
Size:
30,151 bases
Orientation:
Minus strand
chr17:12,663,457-12,693,559
(GRCh37/hg19)
Size:
30,103 bases
Orientation:
Minus strand

Genomic View for LOC100128006 Gene

Genes around LOC100128006 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100128006 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100128006 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100128006 Gene

Proteins for LOC100128006 Gene

Post-translational modifications for LOC100128006 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100128006 Gene

Domains & Families for LOC100128006 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100128006 Gene

Function for LOC100128006 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100128006 Gene

Localization for LOC100128006 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100128006 Gene

Pathways & Interactions for LOC100128006 Gene

SuperPathways for LOC100128006 Gene

No Data Available

Interacting Proteins for LOC100128006 Gene

Gene Ontology (GO) - Biological Process for LOC100128006 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100128006 Gene

Drugs & Compounds for LOC100128006 Gene

No Compound Related Data Available

Transcripts for LOC100128006 Gene

mRNA/cDNA for LOC100128006 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100128006 Gene

No ASD Table

Relevant External Links for LOC100128006 Gene

GeneLoc Exon Structure for
LOC100128006

Expression for LOC100128006 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100128006 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100128006 Gene

This gene is overexpressed in Artery - Aorta (x5.4), Artery - Tibial (x5.3), Artery - Coronary (x4.7), and Colon - Sigmoid (x4.4).
genes like me logo Genes that share expression patterns with LOC100128006: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100128006 Gene

Orthologs for LOC100128006 Gene

Evolution for LOC100128006 Gene

ENSEMBL:
Gene Tree for LOC100128006 (if available)
TreeFam:
Gene Tree for LOC100128006 (if available)

No data available for Orthologs for LOC100128006 Gene

Paralogs for LOC100128006 Gene

No data available for Paralogs for LOC100128006 Gene

Variants for LOC100128006 Gene

Sequence variations from dbSNP and Humsavar for LOC100128006 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs193920964 uncertain-significance, Malignant tumor of prostate 12,763,360(-) AA/A non_coding_transcript_variant
rs1000010793 -- 12,778,181(-) T/ intron_variant
rs1000026502 -- 12,765,611(-) C/T intron_variant
rs1000075482 -- 12,784,513(-) C/T intron_variant
rs1000140795 -- 12,760,129(-) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100128006 Gene

Variant ID Type Subtype PubMed ID
esv3582530 CNV loss 25503493
esv34095 CNV loss 18971310

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100128006 Gene

Disorders for LOC100128006 Gene

Additional Disease Information for LOC100128006

No disorders were found for LOC100128006 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100128006 Gene

Publications for LOC100128006 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LOC100128006 Gene

Sources for LOC100128006 Gene

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