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Aliases for LOC100127955 Gene

Subcategory (RNA class) for LOC100127955 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100127955 Gene

  • Uncharacterized LOC100127955 3
  • AC104129.1 5

External Ids for LOC100127955 Gene

Previous GeneCards Identifiers for LOC100127955 Gene

  • GC07P001852
  • GC07U902793

Summaries for LOC100127955 Gene

GeneCards Summary for LOC100127955 Gene

LOC100127955 (Uncharacterized LOC100127955) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100127955 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100127955 Gene

Genomics for LOC100127955 Gene

GeneHancer (GH) Regulatory Elements for LOC100127955 Gene

Promoters and enhancers for LOC100127955 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I001838 Enhancer 0.4 ENCODE 555.7 +0.7 739 0.3 POLR2A ZBTB33 LOC100127955 GC07M001835 MAD1L1
GH07I001921 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +84.7 84712 1 CTCF ZNF133 MAX SIN3A CEBPG E2F1 CTBP1 GATA3 ZNF444 SMARCE1 LOC100127955 MRM2 MAFK SNX8 GC07M001848 GC07P001949 MAD1L1
GH07I001881 Enhancer 1.1 Ensembl ENCODE 11.8 +45.3 45268 2.3 HDGF ATF1 ARNT FOS CAVIN1 NCOA1 REST ZNF592 MEF2D ZNF184 LOC100127955 MRM2 NUDT1 MAD1L1 EIF3B GC07M001848 MIR4655
GH07I001852 Enhancer 1.4 FANTOM5 Ensembl ENCODE 5.7 +16.5 16453 2.4 HDAC1 PKNOX1 TAF9B KLF17 YY1 TCF12 POLR2B GATA2 EGR1 ATF7 LOC100127955 MIR4655 GC07M001848 MAD1L1
GH07I001925 Enhancer 1.2 Ensembl ENCODE dbSUPER 5.7 +89.7 89651 4.1 HDAC1 FOXA2 PKNOX1 CLOCK SIN3A BATF RAD21 TCF12 ZNF766 RUNX3 MRM2 LOC100127955 GC07P001949 GC07M001848 MAD1L1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100127955 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100127955 Gene

Genomic Locations for LOC100127955 Gene
chr7:1,837,682-1,849,931
(GRCh38/hg38)
Size:
12,250 bases
Orientation:
Plus strand

Genomic View for LOC100127955 Gene

Genes around LOC100127955 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100127955 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100127955 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100127955 Gene

Proteins for LOC100127955 Gene

Post-translational modifications for LOC100127955 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100127955 Gene

Domains & Families for LOC100127955 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100127955 Gene

Function for LOC100127955 Gene

Phenotypes From GWAS Catalog for LOC100127955 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100127955 Gene

Localization for LOC100127955 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100127955 Gene

Pathways & Interactions for LOC100127955 Gene

SuperPathways for LOC100127955 Gene

No Data Available

Interacting Proteins for LOC100127955 Gene

Gene Ontology (GO) - Biological Process for LOC100127955 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100127955 Gene

Drugs & Compounds for LOC100127955 Gene

No Compound Related Data Available

Transcripts for LOC100127955 Gene

mRNA/cDNA for LOC100127955 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100127955 Gene

No ASD Table

Relevant External Links for LOC100127955 Gene

GeneLoc Exon Structure for
LOC100127955

Expression for LOC100127955 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100127955 Gene

Orthologs for LOC100127955 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC100127955 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 93 (a)
OneToOne
Species where no ortholog for LOC100127955 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC100127955 Gene

ENSEMBL:
Gene Tree for LOC100127955 (if available)
TreeFam:
Gene Tree for LOC100127955 (if available)

Paralogs for LOC100127955 Gene

No data available for Paralogs for LOC100127955 Gene

Variants for LOC100127955 Gene

Sequence variations from dbSNP and Humsavar for LOC100127955 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000200412 -- 1,844,012(+) G/T intron_variant
rs1000230071 -- 1,844,936(+) G/C intron_variant
rs1000244313 -- 1,847,643(+) C/G/T non_coding_transcript_variant
rs1000381360 -- 1,848,991(+) G/A non_coding_transcript_variant
rs1000567940 -- 1,844,667(+) G/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100127955 Gene

Disorders for LOC100127955 Gene

Additional Disease Information for LOC100127955

No disorders were found for LOC100127955 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100127955 Gene

Publications for LOC100127955 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100127955 Gene

Sources for LOC100127955 Gene

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