Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100127954 Gene

Aliases for LOC100127954 Gene

  • Pituitary Tumor-Transforming 1 Pseudogene 3
  • AP001858.2 5

External Ids for LOC100127954 Gene

Previous GeneCards Identifiers for LOC100127954 Gene

  • GC11U901160
  • GC11M062556
  • GC11M062800

Summaries for LOC100127954 Gene

GeneCards Summary for LOC100127954 Gene

LOC100127954 (Pituitary Tumor-Transforming 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100127954 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100127954 Gene

Genomics for LOC100127954 Gene

GeneHancer (GH) Regulatory Elements for LOC100127954 Gene

Promoters and enhancers for LOC100127954 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I063035 Enhancer 0.7 ENCODE 0.8 -2.7 -2746 0.2 CTCF CEBPG RAD21 RFX5 YY1 CHAMP1 TEAD3 IRF9 ZBTB48 ARID2 LOC100127954 LOC644436 GC11P063016
GH11I063023 Enhancer 1 Ensembl ENCODE 0.4 +8.9 8920 1.1 HDGF RB1 RAD21 ARID2 SCRT2 ZNF143 RCOR1 IKZF2 RUNX3 THAP11 COX8A GC11P063016 LOC100127954 SLC22A8
GH11I063020 Enhancer 0.6 ENCODE 0.4 +12.3 12274 0.2 CTCF KLF1 RB1 NRF1 SIN3A REST SP1 CBX1 NFIC ZNF143 SLC22A8 GC11P063016 LOC100127954
GH11I063021 Enhancer 0.5 ENCODE 0.4 +12.0 11964 0.2 CTCF NFIC RFX1 NRF1 KLF9 SIN3A ID3 SLC22A8 GC11P063016 LOC100127954
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100127954 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100127954 Gene

Genomic Locations for LOC100127954 Gene
chr11:63,032,447-63,033,108
(GRCh38/hg38)
Size:
662 bases
Orientation:
Minus strand
chr11:62,799,919-62,800,596
(GRCh37/hg19)

Genomic View for LOC100127954 Gene

Genes around LOC100127954 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100127954 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100127954 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100127954 Gene

Proteins for LOC100127954 Gene

Post-translational modifications for LOC100127954 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100127954 Gene

Domains & Families for LOC100127954 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100127954 Gene

Function for LOC100127954 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100127954 Gene

Localization for LOC100127954 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100127954 Gene

Pathways & Interactions for LOC100127954 Gene

SuperPathways for LOC100127954 Gene

No Data Available

Interacting Proteins for LOC100127954 Gene

Gene Ontology (GO) - Biological Process for LOC100127954 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100127954 Gene

Drugs & Compounds for LOC100127954 Gene

No Compound Related Data Available

Transcripts for LOC100127954 Gene

mRNA/cDNA for LOC100127954 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100127954 Gene

No ASD Table

Relevant External Links for LOC100127954 Gene

GeneLoc Exon Structure for
LOC100127954

Expression for LOC100127954 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100127954 Gene

genes like me logo Genes that share expression patterns with LOC100127954: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100127954 Gene

Orthologs for LOC100127954 Gene

Evolution for LOC100127954 Gene

ENSEMBL:
Gene Tree for LOC100127954 (if available)
TreeFam:
Gene Tree for LOC100127954 (if available)

No data available for Orthologs for LOC100127954 Gene

Paralogs for LOC100127954 Gene

No data available for Paralogs for LOC100127954 Gene

Variants for LOC100127954 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100127954 Gene

Disorders for LOC100127954 Gene

Additional Disease Information for LOC100127954

No disorders were found for LOC100127954 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100127954 Gene

Publications for LOC100127954 Gene

No publications were found for LOC100127954 Gene.

Products for LOC100127954 Gene

Sources for LOC100127954 Gene

Content
Loading form....