Aliases for LOC100127954 Gene
External Ids for LOC100127954 Gene
- Entrez Gene: 100127954
- Ensembl: ENSG00000256041
Previous GeneCards Identifiers for LOC100127954 Gene
- GC11U901160
- GC11M062556
- GC11M062800
Summaries for LOC100127954 Gene
GeneCards Summary for LOC100127954 Gene
LOC100127954 (Pituitary Tumor-Transforming 1 Pseudogene) is a Pseudogene.
Additional gene information for LOC100127954 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100127954 Gene
Genomics for LOC100127954 Gene
GeneHancer (GH) Regulatory Elements for LOC100127954 Gene
Promoters and enhancers for LOC100127954 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11I063035 | Enhancer | 0.7 | ENCODE | 0.8 | -2.7 | -2746 | 0.2 | CTCF CEBPG RAD21 RFX5 YY1 CHAMP1 TEAD3 IRF9 ZBTB48 ARID2 | LOC100127954 LOC644436 GC11P063016 | |
| GH11I063023 | Enhancer | 1 | Ensembl ENCODE | 0.4 | +8.9 | 8920 | 1.1 | HDGF RB1 RAD21 ARID2 SCRT2 ZNF143 RCOR1 IKZF2 RUNX3 THAP11 | COX8A GC11P063016 LOC100127954 SLC22A8 | |
| GH11I063020 | Enhancer | 0.6 | ENCODE | 0.4 | +12.3 | 12274 | 0.2 | CTCF KLF1 RB1 NRF1 SIN3A REST SP1 CBX1 NFIC ZNF143 | SLC22A8 GC11P063016 LOC100127954 | |
| GH11I063021 | Enhancer | 0.5 | ENCODE | 0.4 | +12.0 | 11964 | 0.2 | CTCF NFIC RFX1 NRF1 KLF9 SIN3A ID3 | SLC22A8 GC11P063016 LOC100127954 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around LOC100127954 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for LOC100127954 Gene
Genomic Locations for LOC100127954 Gene
- chr11:63,032,447-63,033,108
- (GRCh38/hg38)
- Size:
- 662 bases
- Orientation:
- Minus strand
- chr11:62,799,919-62,800,596
- (GRCh37/hg19)
Genomic View for LOC100127954 Gene
Genes around LOC100127954 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 11q12.3 by Ensembl
- 11q12.3 by Entrez Gene
LOC100127954 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100127954 Gene
Proteins for LOC100127954 Gene
Post-translational modifications for LOC100127954 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for LOC100127954
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100127954
- Origene Custom Protein Services for LOC100127954
- Search GeneTex for Proteins for LOC100127954
No data available for DME Specific Peptides for LOC100127954 Gene
Domains & Families for LOC100127954 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100127954 Gene
Function for LOC100127954 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for LOC100127954
-
- Search ViGene Biosciences for LOC100127954
CRISPR Products
- Browse CRISPR knockouts for LOC100127954
miRNA Products
- Search ViGene Biosciences for LOC100127954
Inhibitory RNA Products
- Search ViGene Biosciences for LOC100127954
Clone Products
- GenScript: Custom all cDNA clones Services for LOC100127954
- VectorBuilder custom plasmid, inducible vectors for LOC100127954
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LOC100127954
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100127954 Gene
Localization for LOC100127954 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100127954 Gene
Transcripts for LOC100127954 Gene
mRNA/cDNA for LOC100127954 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for LOC100127954
miRNA Products
- Search ViGene Biosciences for LOC100127954
Inhibitory RNA Products
- Search ViGene Biosciences for LOC100127954
Clone Products
- GenScript: Custom all cDNA clones Services for LOC100127954
- VectorBuilder custom plasmid, inducible vectors for LOC100127954
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LOC100127954
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Relevant External Links for LOC100127954 Gene
- GeneLoc Exon Structure for
- LOC100127954
Expression for LOC100127954 Gene
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100127954 Gene
Orthologs for LOC100127954 Gene
Evolution for LOC100127954 Gene
- ENSEMBL:
- Gene Tree for LOC100127954 (if available)
- TreeFam:
- Gene Tree for LOC100127954 (if available)
No data available for Orthologs for LOC100127954 Gene
Paralogs for LOC100127954 Gene
No data available for Paralogs for LOC100127954 Gene
Variants for LOC100127954 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100127954 Gene
Disorders for LOC100127954 Gene
Additional Disease Information for LOC100127954
No disorders were found for LOC100127954 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100127954 Gene
Publications for LOC100127954 Gene
No publications were found for LOC100127954 Gene.
Products for LOC100127954 Gene
- Browse R&D Systems for Antibodies
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- Browse Human Proteins and Enzymes
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- Browse Proteins and Enzymes
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- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- GenScript: Custom all cDNA clones Services for LOC100127954
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- Design optimal peptide antigens
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- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for LOC100127954
- VectorBuilder custom plasmid, inducible vectors for LOC100127954
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LOC100127954
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for LOC100127954
- Search GeneTex for Proteins for LOC100127954
- Search ViGene Biosciences for LOC100127954
Sources for LOC100127954 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems