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Aliases for LOC100127900 Gene

Subcategory (RNA class) for LOC100127900 Gene

lncRNA

Aliases for LOC100127900 Gene

  • Nucleoporin 50kDa Pseudogene 3
  • AL356473.1 5

External Ids for LOC100127900 Gene

ORGUL Members for LOC100127900 Gene

Previous GeneCards Identifiers for LOC100127900 Gene

  • GC06U901168
  • GC06M075616

Summaries for LOC100127900 Gene

GeneCards Summary for LOC100127900 Gene

LOC100127900 (Nucleoporin 50kDa Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100127900 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100127900 Gene

Genomics for LOC100127900 Gene

GeneHancer (GH) Regulatory Elements for LOC100127900 Gene

Promoters and enhancers for LOC100127900 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J074825 Enhancer 0.2 ENCODE 0.3 +24.0 23968 1.1 LOC100127900 GC06P074751
GH06J074805 Enhancer 0.2 ENCODE 0.3 +44.1 44078 0.9 LOC100127900 GC06P074751
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100127900 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100127900 Gene

Genomic Locations for LOC100127900 Gene
chr6:74,849,077-74,850,484
(GRCh38/hg38)
Size:
1,408 bases
Orientation:
Minus strand
chr6:75,558,793-75,560,200
(GRCh37/hg19)
Size:
1,408 bases
Orientation:
Minus strand

Genomic View for LOC100127900 Gene

Genes around LOC100127900 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100127900 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100127900 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100127900 Gene

Proteins for LOC100127900 Gene

Post-translational modifications for LOC100127900 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100127900 Gene

Domains & Families for LOC100127900 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100127900 Gene

Function for LOC100127900 Gene

Phenotypes From GWAS Catalog for LOC100127900 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100127900 Gene

Localization for LOC100127900 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100127900 Gene

Pathways & Interactions for LOC100127900 Gene

SuperPathways for LOC100127900 Gene

No Data Available

Interacting Proteins for LOC100127900 Gene

Gene Ontology (GO) - Biological Process for LOC100127900 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100127900 Gene

Drugs & Compounds for LOC100127900 Gene

No Compound Related Data Available

Transcripts for LOC100127900 Gene

mRNA/cDNA for LOC100127900 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100127900 Gene

No ASD Table

Relevant External Links for LOC100127900 Gene

GeneLoc Exon Structure for
LOC100127900

Expression for LOC100127900 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100127900 Gene

genes like me logo Genes that share expression patterns with LOC100127900: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100127900 Gene

Orthologs for LOC100127900 Gene

Evolution for LOC100127900 Gene

ENSEMBL:
Gene Tree for LOC100127900 (if available)
TreeFam:
Gene Tree for LOC100127900 (if available)

No data available for Orthologs for LOC100127900 Gene

Paralogs for LOC100127900 Gene

No data available for Paralogs for LOC100127900 Gene

Variants for LOC100127900 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100127900 Gene

Disorders for LOC100127900 Gene

No disorders were found for LOC100127900 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100127900 Gene

Publications for LOC100127900 Gene

No publications were found for LOC100127900 Gene.

Products for LOC100127900 Gene

Sources for LOC100127900 Gene

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