Aliases for LOC100126784 Gene

Subcategory (RNA class) for LOC100126784 Gene

lncRNA

Quality Score for this RNA gene is

12

Aliases for LOC100126784 Gene

  • Uncharacterized LOC100126784 3
  • Lnc-DBX1-6 170

External Ids for LOC100126784 Gene

Previous GeneCards Identifiers for LOC100126784 Gene

  • GC11U900962

Summaries for LOC100126784 Gene

GeneCards Summary for LOC100126784 Gene

LOC100126784 (Uncharacterized LOC100126784) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100126784 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100126784 Gene

Genomics for LOC100126784 Gene

GeneHancer (GH) Regulatory Elements for LOC100126784 Gene

Promoters and enhancers for LOC100126784 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J019711 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.5 525 6.1 SP1 ZBTB6 RBPJ POLR2A NFYC L3MBTL2 RAD21 ZNF121 MNT TEAD4 ENSG00000270607 LOC100126784 ENSG00000207407 NAV2
GH11J019718 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -8.6 -8629 6.6 TCF7L2 RAD21 MNT SP1 ZIC2 POLR2A RXRA JUND FOS ATF3 ENSG00000207407 LOC100126784 piR-30195-007 NAV2
GH11J019727 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.4 -13.7 -13728 2.8 PATZ1 CEBPB MAX NFIC ZFHX2 CEBPG ENSG00000207407 LOC100126784 piR-30195-007 NAV2
GH11J019735 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.3 -21.3 -21277 0.9 POLR2A RAD21 piR-30195-007 LOC100126784 NAV2
GH11J019730 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.4 -16.0 -15961 1.4 RCOR1 NAV2 ENSG00000207407 piR-30195-007 LOC100126784
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100126784 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100126784 gene promoter:
  • E2F
  • E2F-1
  • Egr-3
  • GATA-1
  • GATA-2
  • GR
  • GR-alpha
  • Lmo2
  • Nkx2-5
  • Pbx1a

Genomic Locations for LOC100126784 Gene

Genomic Locations for LOC100126784 Gene
chr11:19,710,934-19,714,672
(GRCh38/hg38)
Size:
3,739 bases
Orientation:
Minus strand
chr11:19,732,480-19,736,146
(GRCh37/hg19)
Size:
3,667 bases
Orientation:
Minus strand

Genomic View for LOC100126784 Gene

Genes around LOC100126784 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100126784 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100126784 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100126784 Gene

Proteins for LOC100126784 Gene

Post-translational modifications for LOC100126784 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100126784 Gene

Domains & Families for LOC100126784 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100126784 Gene

Function for LOC100126784 Gene

Phenotypes From GWAS Catalog for LOC100126784 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100126784 Gene

Localization for LOC100126784 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100126784 Gene

Pathways & Interactions for LOC100126784 Gene

PathCards logo

SuperPathways for LOC100126784 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100126784 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100126784 Gene

Drugs & Compounds for LOC100126784 Gene

No Compound Related Data Available

Transcripts for LOC100126784 Gene

mRNA/cDNA for LOC100126784 Gene

(1) REFSEQ mRNAs :
(7) Additional mRNA sequences :
(2) RNACentral transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100126784 Gene

No ASD Table

Relevant External Links for LOC100126784 Gene

GeneLoc Exon Structure for
LOC100126784

Expression for LOC100126784 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100126784 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100126784 Gene

This gene is overexpressed in Artery - Aorta (x5.7), Brain - Cortex (x4.7), and Brain - Frontal Cortex (BA9) (x4.0).

SOURCE GeneReport for Unigene cluster for LOC100126784 Gene:

Hs.64341
genes like me logo Genes that share expression patterns with LOC100126784: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100126784 Gene

Orthologs for LOC100126784 Gene

No data available for Orthologs and Evolution for LOC100126784 Gene

Paralogs for LOC100126784 Gene

No data available for Paralogs for LOC100126784 Gene

Variants for LOC100126784 Gene

Sequence variations from dbSNP and Humsavar for LOC100126784 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000168624 -- 19,711,963(-) C/T non_coding_transcript_variant
rs1000339708 -- 19,711,654(-) A/G non_coding_transcript_variant
rs1000369903 -- 19,712,140(-) A/C non_coding_transcript_variant
rs1000701806 -- 19,712,687(-) C/T non_coding_transcript_variant
rs1001134002 -- 19,713,251(-) G/A/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100126784 Gene

Disorders for LOC100126784 Gene

No disorders were found for LOC100126784 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100126784 Gene

Publications for LOC100126784 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LOC100126784 Gene

Products for LOC100126784 Gene

Sources for LOC100126784 Gene