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Aliases for LOC100126784 Gene

Subcategory (RNA class) for LOC100126784 Gene

antisense

Quality Score for this RNA gene is

13.2

Aliases for LOC100126784 Gene

  • Uncharacterized LOC100126784 3
  • AC009549.1 5

External Ids for LOC100126784 Gene

ORGUL Members for LOC100126784 Gene

Previous GeneCards Identifiers for LOC100126784 Gene

  • GC11U900962

Summaries for LOC100126784 Gene

GeneCards Summary for LOC100126784 Gene

LOC100126784 (Uncharacterized LOC100126784) is an RNA Gene, and is affiliated with the antisense RNA class.

fRNAdb sequence ontologies for LOC100126784 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for LOC100126784

Additional gene information for LOC100126784 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LOC100126784 Gene

Genomics for LOC100126784 Gene

GeneHancer (GH) Regulatory Elements for LOC100126784 Gene

Promoters and enhancers for LOC100126784 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J019711 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 650.7 +0.8 768 5.6 PKNOX1 SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B ZNF766 ZNF213 FOS LOC100126784 ENSG00000207407 NAV2 GC11M019646
GH11J019743 Enhancer 0.5 dbSUPER 5.2 -29.1 -29131 1.4 CTCF CC2D1A RXRA SIN3A RAD21 LOC100126784 MIR4694 NAV2
GH11J019722 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -8.8 -8832 2.1 TFAP4 MAX ZIC2 RAD21 RARA YY1 ZFHX2 POLR2A FOS CHD2 ENSG00000207407 LOC100126784 MIR4694 NAV2
GH11J019679 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +34.3 34313 1.9 MXI1 JUN MAX KLF17 SIN3A RAD21 RFX5 YY1 FOSL1 E2F1 ENSG00000207407 GC11M019646 LOC100126784 NAV2
GH11J019698 Enhancer 0.9 ENCODE dbSUPER 0.4 +15.9 15922 0.1 FOXA2 MAX RAD21 RARA ZFHX2 EGR1 HNF4G RXRA REST GABPA LOC100126784 GC11M019646 NAV2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100126784 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100126784 gene promoter:
  • Egr-3
  • Nkx2-5
  • Pbx1a
  • E2F
  • E2F-1
  • GATA-1
  • Lmo2
  • GATA-2
  • GR
  • GR-alpha

Genomic Locations for LOC100126784 Gene

Genomic Locations for LOC100126784 Gene
chr11:19,710,934-19,714,672
(GRCh38/hg38)
Size:
3,739 bases
Orientation:
Minus strand
chr11:19,732,480-19,736,146
(GRCh37/hg19)
Size:
3,667 bases
Orientation:
Minus strand

Genomic View for LOC100126784 Gene

Genes around LOC100126784 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100126784 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100126784 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100126784 Gene

ORGUL Member Location for LOC100126784 Gene

ORGUL Member Location for LOC100126784 gene

Proteins for LOC100126784 Gene

Post-translational modifications for LOC100126784 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100126784 Gene

Domains & Families for LOC100126784 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100126784 Gene

Function for LOC100126784 Gene

Phenotypes From GWAS Catalog for LOC100126784 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100126784 Gene

Localization for LOC100126784 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100126784 Gene

Pathways & Interactions for LOC100126784 Gene

SuperPathways for LOC100126784 Gene

No Data Available

Interacting Proteins for LOC100126784 Gene

Gene Ontology (GO) - Biological Process for LOC100126784 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100126784 Gene

Drugs & Compounds for LOC100126784 Gene

No Compound Related Data Available

Transcripts for LOC100126784 Gene

fRNAdb Secondary structures for LOC100126784 Gene

  • FR012075

mRNA/cDNA for LOC100126784 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC100126784 Gene

Uncharacterized LOC100126784:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100126784 Gene

No ASD Table

Relevant External Links for LOC100126784 Gene

GeneLoc Exon Structure for
LOC100126784

Expression for LOC100126784 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100126784 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100126784 Gene

This gene is overexpressed in Artery - Aorta (x5.7), Brain - Cortex (x4.7), and Brain - Frontal Cortex (BA9) (x4.0).

SOURCE GeneReport for Unigene cluster for LOC100126784 Gene:

Hs.64341
genes like me logo Genes that share expression patterns with LOC100126784: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100126784 Gene

Orthologs for LOC100126784 Gene

Evolution for LOC100126784 Gene

ENSEMBL:
Gene Tree for LOC100126784 (if available)
TreeFam:
Gene Tree for LOC100126784 (if available)

No data available for Orthologs for LOC100126784 Gene

Paralogs for LOC100126784 Gene

No data available for Paralogs for LOC100126784 Gene

Variants for LOC100126784 Gene

Sequence variations from dbSNP and Humsavar for LOC100126784 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000168624 -- 19,711,963(-) C/T non_coding_transcript_variant
rs1000339708 -- 19,711,654(-) A/G non_coding_transcript_variant
rs1000369903 -- 19,712,140(-) A/C non_coding_transcript_variant
rs1000701806 -- 19,712,687(-) C/T non_coding_transcript_variant
rs1001134002 -- 19,713,251(-) G/A/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100126784 Gene

Disorders for LOC100126784 Gene

Additional Disease Information for LOC100126784

No disorders were found for LOC100126784 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100126784 Gene

Publications for LOC100126784 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  3. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  4. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for LOC100126784 Gene

Sources for LOC100126784 Gene

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