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Aliases for LOC100049716 Gene

Subcategory (RNA class) for LOC100049716 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100049716 Gene

  • Uncharacterized LOC100049716 3
  • LOC100049716 Protein 13

External Ids for LOC100049716 Gene

Previous GeneCards Identifiers for LOC100049716 Gene

  • GC00U922295
  • GC12U900888
  • GC12P000740

Summaries for LOC100049716 Gene

GeneCards Summary for LOC100049716 Gene

LOC100049716 (Uncharacterized LOC100049716) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100049716 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100049716 Gene

Genomics for LOC100049716 Gene

GeneHancer (GH) Regulatory Elements for LOC100049716 Gene

Promoters and enhancers for LOC100049716 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100049716 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100049716 gene promoter:
  • AREB6
  • GCNF
  • GCNF-1
  • GCNF-2
  • GR-beta
  • SREBP-1a
  • SREBP-1b
  • SREBP-1c
  • USF-1
  • USF1

Genomic Locations for LOC100049716 Gene

Genomic Locations for LOC100049716 Gene
chr12:630,891-645,878
(GRCh38/hg38)
Size:
14,988 bases
Orientation:
Plus strand

Genomic View for LOC100049716 Gene

Genes around LOC100049716 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100049716 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100049716 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100049716 Gene

Proteins for LOC100049716 Gene

  • Protein details for LOC100049716 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q8N503-Q8N503_HUMAN
    Recommended name:
    LOC100049716 protein
    Protein Accession:
    Q8N503

    Protein attributes for LOC100049716 Gene

    Size:
    292 amino acids
    Molecular mass:
    30625 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC100049716 Gene

Post-translational modifications for LOC100049716 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100049716 Gene

Domains & Families for LOC100049716 Gene

Protein Domains for LOC100049716 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LOC100049716 Gene

GenScript: Design optimal peptide antigens:
  • LOC100049716 protein (Q8N503_HUMAN)

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC100049716: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC100049716 Gene

Function for LOC100049716 Gene

Phenotypes From GWAS Catalog for LOC100049716 Gene

Phenotypes for LOC100049716 Gene

genes like me logo Genes that share phenotypes with LOC100049716: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100049716 Gene

Localization for LOC100049716 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100049716 Gene

Pathways & Interactions for LOC100049716 Gene

PathCards logo

SuperPathways for LOC100049716 Gene

No Data Available

Interacting Proteins for LOC100049716 Gene

Gene Ontology (GO) - Biological Process for LOC100049716 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100049716 Gene

Drugs & Compounds for LOC100049716 Gene

No Compound Related Data Available

Transcripts for LOC100049716 Gene

mRNA/cDNA for LOC100049716 Gene

(4) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for LOC100049716 Gene

Uncharacterized LOC100049716:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100049716 Gene

No ASD Table

Relevant External Links for LOC100049716 Gene

GeneLoc Exon Structure for
LOC100049716

Expression for LOC100049716 Gene

SOURCE GeneReport for Unigene cluster for LOC100049716 Gene:

Hs.655804
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100049716 Gene

Orthologs for LOC100049716 Gene

No data available for Orthologs and Evolution for LOC100049716 Gene

Paralogs for LOC100049716 Gene

No data available for Paralogs for LOC100049716 Gene

Variants for LOC100049716 Gene

Sequence variations from dbSNP and Humsavar for LOC100049716 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000536689 -- 645,386(+) T/C non_coding_transcript_variant
rs1001005284 -- 635,681(+) T/C intron_variant
rs1001177096 -- 640,580(+) A/G intron_variant
rs1001227507 -- 634,254(+) T/C intron_variant
rs1001545541 -- 643,019(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100049716 Gene

Variant ID Type Subtype PubMed ID
dgv1334n100 CNV gain 25217958
dgv2251n54 CNV gain 21841781
esv2759875 CNV gain+loss 17122850
esv29801 CNV loss 19812545
esv3892123 CNV gain 25118596
nsv1040579 CNV gain 25217958
nsv1042529 CNV gain 25217958
nsv1050781 CNV loss 25217958
nsv468951 CNV gain 19166990
nsv470254 CNV gain 18288195
nsv556885 CNV gain 21841781
nsv556887 CNV gain 21841781
nsv556893 CNV gain 21841781
nsv556894 CNV gain 21841781
nsv556895 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100049716 Gene

Disorders for LOC100049716 Gene

No disorders were found for LOC100049716 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100049716 Gene

Publications for LOC100049716 Gene

  1. The lacrimal gland transcriptome is an unusually rich source of rare and poorly characterized gene transcripts. (PMID: 15851553) Ozyildirim AM … Laurie GW (Investigative ophthalmology & visual science 2005) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 13 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LOC100049716 Gene

Products for LOC100049716 Gene

Sources for LOC100049716 Gene

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