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Aliases for LOC100049716 Gene

Subcategory (RNA class) for LOC100049716 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100049716 Gene

  • Uncharacterized LOC100049716 3
  • AC021054.1 5

External Ids for LOC100049716 Gene

Previous GeneCards Identifiers for LOC100049716 Gene

  • GC00U922295
  • GC12U900888
  • GC12P000740

Summaries for LOC100049716 Gene

GeneCards Summary for LOC100049716 Gene

LOC100049716 (Uncharacterized LOC100049716) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100049716 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100049716 Gene

Genomics for LOC100049716 Gene

GeneHancer (GH) Regulatory Elements for LOC100049716 Gene

Promoters and enhancers for LOC100049716 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J000629 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 682.2 +1.2 1246 4.4 PKNOX1 CLOCK FOXA2 SMAD1 MLX ARID4B SIN3A YY1 ZNF207 ZNF143 LOC100049716 NINJ2 KDM5A LOC105369595 PIR35680 GC12P000646
GH12J000628 Enhancer 0.2 dbSUPER 650.7 -1.5 -1527 0.7 LOC100049716 NINJ2 GC12M000616
GH12J000641 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 35.9 +13.8 13800 5.9 FOXA2 MLX ZFP64 ARID4B SIN3A YY1 SLC30A9 ZNF143 ZNF207 FOS PIR35680 GC12P000646 LOC100049716 RAD52 WNK1 KDM5A LOC105369595 NINJ2
GH12J000615 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 31.1 -14.1 -14079 3 FOXA2 ARID4B ZNF48 YY1 SLC30A9 NFKBIZ RXRA SP5 MXD4 MIER2 KDM5A LOC100049716 WNK1 LOC105369595 NINJ2 CCDC77 GC12M000616
GH12J000621 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 31.3 -8.3 -8290 2.4 JUN CEBPG RARA TEAD3 ZNF121 NFATC1 NR2F6 SP5 CEBPB ELF1 GC12M000616 LOC100049716 NINJ2 WNK1 KDM5A CCDC77
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100049716 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100049716 gene promoter:
  • SREBP-1c
  • SREBP-1b
  • SREBP-1a
  • GCNF-2
  • GCNF-1
  • GCNF
  • USF-1
  • USF1
  • AREB6
  • GR-beta

Genomic Locations for LOC100049716 Gene

Genomic Locations for LOC100049716 Gene
chr12:630,891-663,706
(GRCh38/hg38)
Size:
32,816 bases
Orientation:
Plus strand
chr12:740,057-772,872
(GRCh37/hg19)
Size:
32,816 bases
Orientation:
Plus strand

Genomic View for LOC100049716 Gene

Genes around LOC100049716 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100049716 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100049716 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100049716 Gene

Proteins for LOC100049716 Gene

  • Protein details for LOC100049716 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q8N503-Q8N503_HUMAN
    Recommended name:
    LOC100049716 protein
    Protein Accession:
    Q8N503

    Protein attributes for LOC100049716 Gene

    Size:
    292 amino acids
    Molecular mass:
    30625 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC100049716 Gene

Post-translational modifications for LOC100049716 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100049716 Gene

Domains & Families for LOC100049716 Gene

Protein Domains for LOC100049716 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LOC100049716 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC100049716: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC100049716 Gene

Function for LOC100049716 Gene

Phenotypes From GWAS Catalog for LOC100049716 Gene

Phenotypes for LOC100049716 Gene

genes like me logo Genes that share phenotypes with LOC100049716: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100049716 Gene

Localization for LOC100049716 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100049716 Gene

Pathways & Interactions for LOC100049716 Gene

SuperPathways for LOC100049716 Gene

No Data Available

Interacting Proteins for LOC100049716 Gene

Gene Ontology (GO) - Biological Process for LOC100049716 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100049716 Gene

Drugs & Compounds for LOC100049716 Gene

No Compound Related Data Available

Transcripts for LOC100049716 Gene

mRNA/cDNA for LOC100049716 Gene

(6) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Unigene Clusters for LOC100049716 Gene

Uncharacterized LOC100049716:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100049716 Gene

No ASD Table

Relevant External Links for LOC100049716 Gene

GeneLoc Exon Structure for
LOC100049716

Expression for LOC100049716 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100049716 Gene

SOURCE GeneReport for Unigene cluster for LOC100049716 Gene:

Hs.655804
genes like me logo Genes that share expression patterns with LOC100049716: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100049716 Gene

Orthologs for LOC100049716 Gene

Evolution for LOC100049716 Gene

ENSEMBL:
Gene Tree for LOC100049716 (if available)
TreeFam:
Gene Tree for LOC100049716 (if available)

No data available for Orthologs for LOC100049716 Gene

Paralogs for LOC100049716 Gene

No data available for Paralogs for LOC100049716 Gene

Variants for LOC100049716 Gene

Sequence variations from dbSNP and Humsavar for LOC100049716 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000536689 -- 645,386(+) T/C non_coding_transcript_variant
rs1001005284 -- 635,681(+) T/C intron_variant
rs1001177096 -- 640,580(+) A/G intron_variant
rs1001227507 -- 634,254(+) T/C intron_variant
rs1001545541 -- 643,019(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100049716 Gene

Variant ID Type Subtype PubMed ID
nsv556895 CNV gain 21841781
nsv556894 CNV gain 21841781
nsv556893 CNV gain 21841781
nsv556887 CNV gain 21841781
nsv556885 CNV gain 21841781
nsv470254 CNV gain 18288195
nsv468951 CNV gain 19166990
nsv1050781 CNV loss 25217958
nsv1042529 CNV gain 25217958
nsv1040579 CNV gain 25217958
esv3892123 CNV gain 25118596
esv29801 CNV loss 19812545
esv2759875 CNV gain+loss 17122850
dgv2251n54 CNV gain 21841781
dgv1334n100 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100049716 Gene

Disorders for LOC100049716 Gene

Additional Disease Information for LOC100049716

No disorders were found for LOC100049716 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100049716 Gene

Publications for LOC100049716 Gene

  1. The lacrimal gland transcriptome is an unusually rich source of rare and poorly characterized gene transcripts. (PMID: 15851553) Ozyildirim AM … Laurie GW (Investigative ophthalmology & visual science 2005) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC100049716 Gene

Sources for LOC100049716 Gene

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