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Aliases for LNX1-AS2 Gene

Subcategory (RNA class) for LNX1-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LNX1-AS2 Gene

  • LNX1 Antisense RNA 2 2 3 5
  • LNX1 Antisense RNA 2 (Non-Protein Coding) 2

External Ids for LNX1-AS2 Gene

Previous GeneCards Identifiers for LNX1-AS2 Gene

  • GC00U932987
  • GC04P054460

Summaries for LNX1-AS2 Gene

GeneCards Summary for LNX1-AS2 Gene

LNX1-AS2 (LNX1 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LNX1-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LNX1-AS2 Gene

Genomics for LNX1-AS2 Gene

GeneHancer (GH) Regulatory Elements for LNX1-AS2 Gene

Promoters and enhancers for LNX1-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I053589 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 -1.3 -1264 4.8 HDAC1 PKNOX1 CLOCK ATF1 SIN3A RAD21 YY1 ZEB1 SCRT2 FOS LNX1 LNX1-AS2 LOC100506444 FIP1L1 LOC101928879 GC04P053572 ENSG00000282278
GH04I053496 Enhancer 0.9 Ensembl ENCODE 5.6 -95.6 -95622 1.7 SOX5 MEIS2 SOX13 GATAD2A PKNOX1 RXRA HLF CEBPB CEBPG RAD21 LNX1-AS1 FIP1L1 LNX1-AS2 PIR61049 ENSG00000282278 LNX1
GH04I053575 Enhancer 0.8 ENCODE 0.4 -16.3 -16262 2.6 FOXA2 INSM2 CEBPG FEZF1 ZNF2 ZNF335 GATA3 GLI2 ZSCAN5C FOSL2 LOC101928879 LNX1 GC04P053572 LNX1-AS2 ENSG00000282278
GH04I053602 Enhancer 0.7 ENCODE 0.4 +8.7 8653 0.2 CTCF PKNOX1 NFIB MAX SIN3A EBF1 ZNF2 RAD21 TEAD3 CTBP1 LOC100506444 LNX1 LNX1-AS2 GC04P053572 ENSG00000282278
GH04I053601 Enhancer 0.6 ENCODE 0.4 +8.4 8425 0 SMARCE1 ZNF687 NFIB SIN3A DPF2 MNT ZNF2 ZNF592 ZNF217 CTBP1 LOC100506444 LNX1 LNX1-AS2 GC04P053572 ENSG00000282278
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LNX1-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LNX1-AS2 Gene

Genomic Locations for LNX1-AS2 Gene
chr4:53,592,956-53,605,382
(GRCh38/hg38)
Size:
12,427 bases
Orientation:
Plus strand
chr4:54,459,123-54,470,214
(GRCh37/hg19)

Genomic View for LNX1-AS2 Gene

Genes around LNX1-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LNX1-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LNX1-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LNX1-AS2 Gene

Proteins for LNX1-AS2 Gene

Post-translational modifications for LNX1-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LNX1-AS2 Gene

Domains & Families for LNX1-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LNX1-AS2 Gene

Function for LNX1-AS2 Gene

Phenotypes From GWAS Catalog for LNX1-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LNX1-AS2 Gene

Localization for LNX1-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LNX1-AS2 Gene

Pathways & Interactions for LNX1-AS2 Gene

SuperPathways for LNX1-AS2 Gene

No Data Available

Interacting Proteins for LNX1-AS2 Gene

Gene Ontology (GO) - Biological Process for LNX1-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LNX1-AS2 Gene

Drugs & Compounds for LNX1-AS2 Gene

No Compound Related Data Available

Transcripts for LNX1-AS2 Gene

mRNA/cDNA for LNX1-AS2 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LNX1-AS2 Gene

LNX1 antisense RNA 2:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LNX1-AS2 Gene

No ASD Table

Relevant External Links for LNX1-AS2 Gene

GeneLoc Exon Structure for
LNX1-AS2
ECgene alternative splicing isoforms for
LNX1-AS2

Expression for LNX1-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LNX1-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for LNX1-AS2 Gene

This gene is overexpressed in Adrenal Gland (x7.3) and Pancreas (x4.4).

SOURCE GeneReport for Unigene cluster for LNX1-AS2 Gene:

Hs.351074
genes like me logo Genes that share expression patterns with LNX1-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LNX1-AS2 Gene

Orthologs for LNX1-AS2 Gene

Evolution for LNX1-AS2 Gene

ENSEMBL:
Gene Tree for LNX1-AS2 (if available)
TreeFam:
Gene Tree for LNX1-AS2 (if available)

No data available for Orthologs for LNX1-AS2 Gene

Paralogs for LNX1-AS2 Gene

No data available for Paralogs for LNX1-AS2 Gene

Variants for LNX1-AS2 Gene

Sequence variations from dbSNP and Humsavar for LNX1-AS2 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000821104 -- 53,601,110(+) G/A intron_variant
rs1001169338 -- 53,596,084(+) A/G intron_variant
rs1001179752 -- 53,601,368(+) G/A/C/T intron_variant
rs1001221950 -- 53,595,870(+) TTTTTTTTT/TTTTTTTT/TTTTTTTTTT intron_variant
rs1001723375 -- 53,601,914(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LNX1-AS2 Gene

Variant ID Type Subtype PubMed ID
dgv5208n100 CNV gain 25217958
esv3600530 CNV loss 21293372
nsv437918 CNV loss 16468122
nsv829936 CNV gain 17160897

Additional Variant Information for LNX1-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LNX1-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LNX1-AS2 Gene

Disorders for LNX1-AS2 Gene

Additional Disease Information for LNX1-AS2

No disorders were found for LNX1-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LNX1-AS2 Gene

Publications for LNX1-AS2 Gene

No publications were found for LNX1-AS2 Gene.

Products for LNX1-AS2 Gene

Sources for LNX1-AS2 Gene

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