Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LNX1-AS1 Gene

Subcategory (RNA class) for LNX1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LNX1-AS1 Gene

  • LNX1 Antisense RNA 1 2 3 5
  • LNX1 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for LNX1-AS1 Gene

Previous GeneCards Identifiers for LNX1-AS1 Gene

  • GC00U933868
  • GC04P054363

Summaries for LNX1-AS1 Gene

GeneCards Summary for LNX1-AS1 Gene

LNX1-AS1 (LNX1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LNX1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LNX1-AS1 Gene

Genomics for LNX1-AS1 Gene

GeneHancer (GH) Regulatory Elements for LNX1-AS1 Gene

Promoters and enhancers for LNX1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J053496 Enhancer 0.9 Ensembl ENCODE 650.7 +0.9 934 1.7 SOX5 MEIS2 SOX13 GATAD2A PKNOX1 RXRA HLF CEBPB CEBPG RAD21 LNX1-AS1 FIP1L1 LNX1-AS2 PIR61049 ENSG00000282278 LNX1
GH04J053507 Enhancer 1 Ensembl ENCODE 0.4 +11.7 11714 1.8 PKNOX1 FOXA2 NFRKB DMAP1 RAD21 YY1 ZNF766 EGR1 FOS RXRA SCFD2 LNX1-AS1 PIR61049 ENSG00000282278 LNX1
GH04J053478 Enhancer 0.9 Ensembl ENCODE 0.4 -17.0 -16951 2.1 CEBPG FOSL1 ZNF316 POLR3A NFE2 FOS MAFK MAFG DACH1 DPF2 LOC100506444 LNX1 FIP1L1 SCFD2 LNX1-AS1 GC04M053405 ENSG00000282278
GH04J053475 Enhancer 0.8 Ensembl ENCODE 0.4 -19.5 -19522 2.8 USF1 FOXA2 ATF2 ZKSCAN1 TEAD3 SP1 JUND GATA3 CREB1 ATF7 SCFD2 FIP1L1 LNX1-AS1 GC04M053405 ENSG00000282278 LNX1
GH04J053489 Enhancer 0.8 Ensembl ENCODE 0.4 -5.5 -5520 1.8 CTCF FOXA2 TRIM22 MAFG CEBPB CEBPG ZNF384 RAD21 MAFF ZNF316 SCFD2 USP46-AS1 LNX1-AS1 GC04M053405 ENSG00000282278 LNX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LNX1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LNX1-AS1 Gene

Genomic Locations for LNX1-AS1 Gene
chr4:53,496,400-53,549,578
(GRCh38/hg38)
Size:
53,179 bases
Orientation:
Plus strand
chr4:54,362,567-54,415,745
(GRCh37/hg19)
Size:
53,179 bases
Orientation:
Plus strand

Genomic View for LNX1-AS1 Gene

Genes around LNX1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LNX1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LNX1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LNX1-AS1 Gene

Function for LNX1-AS1 Gene

Phenotypes From GWAS Catalog for LNX1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LNX1-AS1 Gene

Localization for LNX1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LNX1-AS1 Gene

Pathways & Interactions for LNX1-AS1 Gene

SuperPathways for LNX1-AS1 Gene

No Data Available

Interacting Proteins for LNX1-AS1 Gene

Gene Ontology (GO) - Biological Process for LNX1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LNX1-AS1 Gene

Drugs & Compounds for LNX1-AS1 Gene

No Compound Related Data Available

Transcripts for LNX1-AS1 Gene

mRNA/cDNA for LNX1-AS1 Gene

(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Unigene Clusters for LNX1-AS1 Gene

LNX1 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LNX1-AS1 Gene

No ASD Table

Relevant External Links for LNX1-AS1 Gene

GeneLoc Exon Structure for
LNX1-AS1
ECgene alternative splicing isoforms for
LNX1-AS1

Expression for LNX1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LNX1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for LNX1-AS1 Gene

This gene is overexpressed in Testis (x47.6).

SOURCE GeneReport for Unigene cluster for LNX1-AS1 Gene:

Hs.662372
genes like me logo Genes that share expression patterns with LNX1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LNX1-AS1 Gene

Orthologs for LNX1-AS1 Gene

Evolution for LNX1-AS1 Gene

ENSEMBL:
Gene Tree for LNX1-AS1 (if available)
TreeFam:
Gene Tree for LNX1-AS1 (if available)

No data available for Orthologs for LNX1-AS1 Gene

Paralogs for LNX1-AS1 Gene

No data available for Paralogs for LNX1-AS1 Gene

Variants for LNX1-AS1 Gene

Sequence variations from dbSNP and Humsavar for LNX1-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000047807 -- 53,507,149(+) T/ intron_variant
rs1000581023 -- 53,511,861(+) C/G intron_variant
rs10006662 -- 53,512,157(+) T/A/C/G intron_variant
rs1000777118 -- 53,518,074(+) A/G intron_variant
rs1000808484 -- 53,518,335(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LNX1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv829936 CNV gain 17160897
esv3600527 CNV loss 21293372
esv3339869 CNV insertion 20981092
esv28169 CNV gain 19812545

Additional Variant Information for LNX1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LNX1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LNX1-AS1 Gene

Disorders for LNX1-AS1 Gene

Additional Disease Information for LNX1-AS1

No disorders were found for LNX1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LNX1-AS1 Gene

Publications for LNX1-AS1 Gene

No publications were found for LNX1-AS1 Gene.

Products for LNX1-AS1 Gene

Sources for LNX1-AS1 Gene

Content
Loading form....