Aliases for LNCTAM34A Gene

Data sources for LNCTAM34A Gene:

RNA type for LNCTAM34A Gene

lncRNA

Aliases for LNCTAM34A Gene

External Ids for LNCTAM34A Gene

Previous HGNC Symbols for LNCTAM34A Gene

  • LINC01759

Summaries for LNCTAM34A Gene

GeneCards Summary for LNCTAM34A Gene

LNCTAM34A (Long Non Coding Transcriptional Activator Of MiR34a) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LNCTAM34A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LNCTAM34A Gene

Genomics for LNCTAM34A Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LNCTAM34A Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LNCTAM34A on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LNCTAM34A Gene

Latest Assembly
chr1:9,181,549-9,198,866
(GRCh38/hg38)
Size:
17,318 bases
Orientation:
Plus strand

Previous Assembly
chr1:9,242,263-9,252,145
(GRCh37/hg19 by Entrez Gene)
Size:
9,883 bases
Orientation:
Plus strand

chr1:9,242,263-9,252,148
(GRCh37/hg19 by Ensembl)
Size:
9,886 bases
Orientation:
Plus strand

Genomic View for LNCTAM34A Gene

Genes around LNCTAM34A on UCSC Golden Path with GeneCards custom track
LNCTAM34A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LNCTAM34A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LNCTAM34A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LNCTAM34A Gene

Proteins for LNCTAM34A Gene

Post-translational modifications for LNCTAM34A Gene

No Post-translational modifications

No data available for DME Specific Peptides for LNCTAM34A Gene

Domains & Families for LNCTAM34A Gene

Gene Families for LNCTAM34A Gene

genes like me logo Genes that share domains with LNCTAM34A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LNCTAM34A Gene

Function for LNCTAM34A Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LNCTAM34A Gene

Localization for LNCTAM34A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LNCTAM34A Gene

Pathways & Interactions for LNCTAM34A Gene

PathCards logo

SuperPathways for LNCTAM34A Gene

No Data Available

Gene Ontology (GO) - Biological Process for LNCTAM34A Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LNCTAM34A Gene

Drugs & Compounds for LNCTAM34A Gene

No Compound Related Data Available

Transcripts for LNCTAM34A Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LNCTAM34A Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00009C606B_9606 lncRNA 891 2

Ensembl: ENST00000635271 (view in UCSC) ,

LNCipedia: LINC01759:18,

URS0000EF12A8_9606 lncRNA 1265 1

Ensembl: ENST00000657715 (view in UCSC) ,

URS0000EEBCE4_9606 lncRNA 1114 1

Ensembl: ENST00000664915 (view in UCSC) ,

URS0000EED816_9606 lncRNA 1025 1

Ensembl: ENST00000412639 (view in UCSC) ,

URS00008E3A18_9606 lncRNA 981 1

RefSeq: NR_132738,

LNCTAM34A in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LNCTAM34A Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LNCTAM34A Gene

No ASD Table

Relevant External Links for LNCTAM34A Gene

GeneLoc Exon Structure for
LNCTAM34A

Expression for LNCTAM34A Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LNCTAM34A Gene

Orthologs for LNCTAM34A Gene

Evolution for LNCTAM34A Gene

ENSEMBL:
Gene Tree for LNCTAM34A (if available)
TreeFam:
Gene Tree for LNCTAM34A (if available)
Alliance of Genome Resources:
Additional Orthologs for LNCTAM34A

No data available for Orthologs for LNCTAM34A Gene

Paralogs for LNCTAM34A Gene

No data available for Paralogs for LNCTAM34A Gene

Variants for LNCTAM34A Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LNCTAM34A Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LNCTAM34A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LNCTAM34A
Leiden Open Variation Database (LOVD)
LNCTAM34A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LNCTAM34A Gene

Disorders for LNCTAM34A Gene

Additional Disease Information for LNCTAM34A

No disorders were found for LNCTAM34A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LNCTAM34A Gene

Publications for LNCTAM34A Gene

  1. A lncRNA GUARDINg genome integrity. (PMID: 29593321) Grossi E … Huarte M (Nature cell biology 2018) 2 3
  2. An antisense RNA capable of modulating the expression of the tumor suppressor microRNA-34a. (PMID: 29970884) Serviss JT … Pokrovskaja Tamm K (Cell death & disease 2018) 2 3
  3. GUARDIN is a p53-responsive long non-coding RNA that is essential for genomic stability. (PMID: 29593331) Hu WL … Wu M (Nature cell biology 2018) 3
  4. Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes. (PMID: 17567985) Tsuritani K … Suzuki Y (Genome research 2007) 3

Products for LNCTAM34A Gene

Sources for LNCTAM34A Gene