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Aliases for LNCSRLR Gene

Subcategory (RNA class) for LNCSRLR Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LNCSRLR Gene

  • LncRNA Sorafenib Resistance In Renal Cell Carcinoma Associated 2 3 5
  • Sorafenib Resistance-Associated LncRNA In RCC 2 3
  • LncRNA-SRLR 3

External Ids for LNCSRLR Gene

Summaries for LNCSRLR Gene

GeneCards Summary for LNCSRLR Gene

LNCSRLR (LncRNA Sorafenib Resistance In Renal Cell Carcinoma Associated) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LNCSRLR Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LNCSRLR Gene

Genomics for LNCSRLR Gene

GeneHancer (GH) Regulatory Elements for LNCSRLR Gene

Promoters and enhancers for LNCSRLR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I146151 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 32.6 -90.4 -90413 15.9 FOXA2 MLX ARNT ARID4B NEUROD1 SIN3A DMAP1 ZNF2 ZBTB7B YY1 PLOD2 LNCSRLR PLSCR4 ENSG00000243415 ENSG00000261051 GC03M146166 LOC105374145 GC03P146077
GH03I146115 Enhancer 1.1 ENCODE dbSUPER 31.3 -46.6 -46554 1.2 PKNOX1 CLOCK FOXA2 MLX ARID4B DMAP1 YY1 RXRA REST PPARG LNCSRLR PLOD2 ENSG00000243415 PLSCR4 GC03P146077
GH03I146125 Enhancer 1.1 Ensembl ENCODE dbSUPER 31.3 -56.9 -56898 1.4 GATAD2A FOXA2 JUN CEBPB REST CEBPG EP300 RFX5 SP1 JUND PLOD2 LNCSRLR ENSG00000243415 PLSCR5 ENSG00000261051 GC03P146077
GH03I146142 Enhancer 0.7 ENCODE dbSUPER 29.2 -74.0 -74032 1.7 MAFF BACH1 PRDM10 MAFK YY1 ZBTB17 PLOD2 LNCSRLR ENSG00000243415 PLSCR4 GC03P146077
GH03I146117 Enhancer 0.5 ENCODE dbSUPER 32.4 -49.0 -48989 2.1 FOS LNCSRLR PLOD2 ENSG00000243415 PLSCR4 ENSG00000261051 GC03P146077
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LNCSRLR on UCSC Golden Path with GeneCards custom track

Genomic Locations for LNCSRLR Gene

Genomic Locations for LNCSRLR Gene
chr3:146,066,344-146,069,185
(GRCh38/hg38)
Size:
2,842 bases
Orientation:
Minus strand
chr3:145,784,131-145,786,972
(GRCh37/hg19)

Genomic View for LNCSRLR Gene

Genes around LNCSRLR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LNCSRLR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LNCSRLR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LNCSRLR Gene

Proteins for LNCSRLR Gene

Post-translational modifications for LNCSRLR Gene

No Post-translational modifications

No data available for DME Specific Peptides for LNCSRLR Gene

Domains & Families for LNCSRLR Gene

Gene Families for LNCSRLR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LNCSRLR: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LNCSRLR Gene

Function for LNCSRLR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LNCSRLR Gene

Localization for LNCSRLR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LNCSRLR Gene

Pathways & Interactions for LNCSRLR Gene

SuperPathways for LNCSRLR Gene

No Data Available

Interacting Proteins for LNCSRLR Gene

Gene Ontology (GO) - Biological Process for LNCSRLR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LNCSRLR Gene

Drugs & Compounds for LNCSRLR Gene

No Compound Related Data Available

Transcripts for LNCSRLR Gene

mRNA/cDNA for LNCSRLR Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LNCSRLR Gene

No ASD Table

Relevant External Links for LNCSRLR Gene

GeneLoc Exon Structure for
LNCSRLR
ECgene alternative splicing isoforms for
LNCSRLR

Expression for LNCSRLR Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LNCSRLR Gene

Orthologs for LNCSRLR Gene

Evolution for LNCSRLR Gene

ENSEMBL:
Gene Tree for LNCSRLR (if available)
TreeFam:
Gene Tree for LNCSRLR (if available)

No data available for Orthologs for LNCSRLR Gene

Paralogs for LNCSRLR Gene

No data available for Paralogs for LNCSRLR Gene

Variants for LNCSRLR Gene

Additional Variant Information for LNCSRLR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LNCSRLR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LNCSRLR Gene

Disorders for LNCSRLR Gene

Additional Disease Information for LNCSRLR

No disorders were found for LNCSRLR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LNCSRLR Gene

Publications for LNCSRLR Gene

  1. Long noncoding RNA-SRLR elicits intrinsic sorafenib resistance via evoking IL-6/STAT3 axis in renal cell carcinoma. (PMID: 27841868) Xu Z … Wang L (Oncogene 2017) 2 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LNCSRLR Gene

Sources for LNCSRLR Gene

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