Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LNCRI Gene

Subcategory (RNA class) for LNCRI Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for LNCRI Gene

  • LncRNA Radiation Induced Regulator Of PLK1 And RAD51 2 3
  • Lnc-RI 3

External Ids for LNCRI Gene

Summaries for LNCRI Gene

GeneCards Summary for LNCRI Gene

LNCRI (LncRNA Radiation Induced Regulator Of PLK1 And RAD51) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LNCRI Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LNCRI Gene

Genomics for LNCRI Gene

GeneHancer (GH) Regulatory Elements for LNCRI Gene

Promoters and enhancers for LNCRI Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I001694 Enhancer 0.6 ENCODE 550.8 +0.0 47 0.2 MAZ RFX1 ZBTB21 MAX BMI1 ZIC2 ZFHX2 POLR2A ZNF629 GLIS1 ENSG00000205971 LNCRI ENSG00000234977 ELFN1
GH07I001695 Enhancer 0.3 ENCODE 550.8 -0.4 -363 0.2 MNT ENSG00000205971 LNCRI ELFN1 LOC105375124
GH07I001713 Enhancer 0.9 ENCODE 0.4 -19.3 -19319 1.4 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF48 ETS1 YY1 SLC30A9 LOC105375124 LNCRI ELFN1
GH07I001691 Enhancer 0.3 ENCODE 0.8 +2.4 2415 0.9 GATA3 ENSG00000234977 PSMG3-AS1 LNCRI ELFN1
GH07I001719 Enhancer 0.6 ENCODE 0.3 -25.0 -25003 0.2 KLF1 SP3 SP2 SP1 ZFHX2 EGR1 KLF9 KLF13 KLF8 ENSG00000205971 ENSG00000234977 LOC105375124 LNCRI ELFN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LNCRI on UCSC Golden Path with GeneCards custom track

Genomic Locations for LNCRI Gene

Genomic Locations for LNCRI Gene
chr7:1,692,112-1,694,437
(GRCh38/hg38)
Size:
2,326 bases
Orientation:
Minus strand

Genomic View for LNCRI Gene

Genes around LNCRI on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LNCRI Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LNCRI Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LNCRI Gene

Proteins for LNCRI Gene

Post-translational modifications for LNCRI Gene

No Post-translational modifications

No data available for DME Specific Peptides for LNCRI Gene

Domains & Families for LNCRI Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LNCRI Gene

Function for LNCRI Gene

Phenotypes for LNCRI Gene

GenomeRNAi human phenotypes for LNCRI:
genes like me logo Genes that share phenotypes with LNCRI: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LNCRI Gene

Localization for LNCRI Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LNCRI Gene

Pathways & Interactions for LNCRI Gene

SuperPathways for LNCRI Gene

No Data Available

Interacting Proteins for LNCRI Gene

Gene Ontology (GO) - Biological Process for LNCRI Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LNCRI Gene

Drugs & Compounds for LNCRI Gene

No Compound Related Data Available

Transcripts for LNCRI Gene

mRNA/cDNA for LNCRI Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LNCRI Gene

No ASD Table

Relevant External Links for LNCRI Gene

GeneLoc Exon Structure for
LNCRI
ECgene alternative splicing isoforms for
LNCRI

Expression for LNCRI Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LNCRI Gene

Orthologs for LNCRI Gene

No data available for Orthologs and Evolution for LNCRI Gene

Paralogs for LNCRI Gene

No data available for Paralogs for LNCRI Gene

Variants for LNCRI Gene

Sequence variations from dbSNP and Humsavar for LNCRI Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000010891 -- 1,693,398(-) G/T non_coding_transcript_variant
rs1000075173 -- 1,691,645(-) C/A/T non_coding_transcript_variant
rs1000265957 -- 1,695,979(-) G/A upstream_transcript_variant
rs1000569993 -- 1,697,064(-) G/A upstream_transcript_variant
rs1000673981 -- 1,692,679(-) G/A intron_variant, non_coding_transcript_variant

Additional Variant Information for LNCRI Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LNCRI

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LNCRI Gene

Disorders for LNCRI Gene

No disorders were found for LNCRI Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LNCRI Gene

Publications for LNCRI Gene

  1. LncRNA lnc-RI regulates homologous recombination repair of DNA double-strand breaks by stabilizing RAD51 mRNA as a competitive endogenous RNA. (PMID: 29216366) Shen L … Wang Z (Nucleic acids research 2018) 2 3 58
  2. Long noncoding RNA lnc-RI is a new regulator of mitosis via targeting miRNA-210-3p to release PLK1 mRNA activity. (PMID: 27160062) Wang ZD … Zhou PK (Scientific reports 2016) 2 3 58
  3. The palmitoyl acyltransferase HIP14 shares a high proportion of interactors with huntingtin: implications for a role in the pathogenesis of Huntington's disease. (PMID: 24705354) Butland SL … Hayden MR (Human molecular genetics 2014) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LNCRI Gene

Sources for LNCRI Gene

Content
Loading form....