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Aliases for LNCPRESS2 Gene

Subcategory (RNA class) for LNCPRESS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LNCPRESS2 Gene

  • LncRNA P53 Regulated And ESC Associated 2 2 3 5
  • LncRNA P53 Regulated And ESC Specific 2 2

External Ids for LNCPRESS2 Gene

Summaries for LNCPRESS2 Gene

GeneCards Summary for LNCPRESS2 Gene

LNCPRESS2 (LncRNA P53 Regulated And ESC Associated 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LNCPRESS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LNCPRESS2 Gene

Genomics for LNCPRESS2 Gene

GeneHancer (GH) Regulatory Elements for LNCPRESS2 Gene

Promoters and enhancers for LNCPRESS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I092276 Enhancer 0.6 ENCODE dbSUPER 550.8 -0.1 -78 1.6 POLR2A SIN3A LNCPRESS2 GRID2 ENSG00000248511
GH04I092270 Enhancer 0.7 ENCODE dbSUPER 0.4 +6.3 6315 1.2 CTCF POLR2A BACH1 SIN3A LNCPRESS2 ENSG00000280056
GH04I092271 Enhancer 0.4 ENCODE dbSUPER 0.4 +5.7 5704 0 LNCPRESS2 ENSG00000280056
GH04I092272 Enhancer 0.2 ENCODE 0.4 +5.6 5627 0.1 LNCPRESS2 ENSG00000280056
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LNCPRESS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LNCPRESS2 Gene

Genomic Locations for LNCPRESS2 Gene
chr4:92,262,498-92,277,302
(GRCh38/hg38)
Size:
14,805 bases
Orientation:
Minus strand
chr4:93,189,918-93,198,226
(GRCh37/hg19)

Genomic View for LNCPRESS2 Gene

Genes around LNCPRESS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LNCPRESS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LNCPRESS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LNCPRESS2 Gene

Proteins for LNCPRESS2 Gene

Post-translational modifications for LNCPRESS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LNCPRESS2 Gene

Domains & Families for LNCPRESS2 Gene

Gene Families for LNCPRESS2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LNCPRESS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LNCPRESS2 Gene

Function for LNCPRESS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LNCPRESS2 Gene

Localization for LNCPRESS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LNCPRESS2 Gene

Pathways & Interactions for LNCPRESS2 Gene

SuperPathways for LNCPRESS2 Gene

No Data Available

Interacting Proteins for LNCPRESS2 Gene

Gene Ontology (GO) - Biological Process for LNCPRESS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LNCPRESS2 Gene

Drugs & Compounds for LNCPRESS2 Gene

No Compound Related Data Available

Transcripts for LNCPRESS2 Gene

mRNA/cDNA for LNCPRESS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LNCPRESS2 Gene

No ASD Table

Relevant External Links for LNCPRESS2 Gene

GeneLoc Exon Structure for
LNCPRESS2
ECgene alternative splicing isoforms for
LNCPRESS2

Expression for LNCPRESS2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LNCPRESS2 Gene

Orthologs for LNCPRESS2 Gene

Evolution for LNCPRESS2 Gene

ENSEMBL:
Gene Tree for LNCPRESS2 (if available)
TreeFam:
Gene Tree for LNCPRESS2 (if available)

No data available for Orthologs for LNCPRESS2 Gene

Paralogs for LNCPRESS2 Gene

No data available for Paralogs for LNCPRESS2 Gene

Variants for LNCPRESS2 Gene

Sequence variations from dbSNP and Humsavar for LNCPRESS2 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000129419 -- 92,262,417(-) A/G downstream_transcript_variant
rs1000161924 -- 92,262,138(-) T/C downstream_transcript_variant
rs1000219619 -- 92,274,677(-) C/T intron_variant
rs1000409395 -- 92,273,815(-) G/A intron_variant
rs1000486250 -- 92,273,669(-) C/G intron_variant

Additional Variant Information for LNCPRESS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LNCPRESS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LNCPRESS2 Gene

Disorders for LNCPRESS2 Gene

Additional Disease Information for LNCPRESS2

No disorders were found for LNCPRESS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LNCPRESS2 Gene

Publications for LNCPRESS2 Gene

  1. LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56. (PMID: 27912097) Jain AK … Barton MC (Molecular cell 2016) 2 3 58

Products for LNCPRESS2 Gene

Sources for LNCPRESS2 Gene

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