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Aliases for LNCPRESS1 Gene

Subcategory (RNA class) for LNCPRESS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LNCPRESS1 Gene

  • LncRNA P53 Regulated And ESC Associated 1 2 3 5
  • LncRNA P53 Regulated And ESC Specific 1 2 3

External Ids for LNCPRESS1 Gene

Summaries for LNCPRESS1 Gene

GeneCards Summary for LNCPRESS1 Gene

LNCPRESS1 (LncRNA P53 Regulated And ESC Associated 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LNCPRESS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LNCPRESS1 Gene

Genomics for LNCPRESS1 Gene

GeneHancer (GH) Regulatory Elements for LNCPRESS1 Gene

Promoters and enhancers for LNCPRESS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J101299 Enhancer 0.6 ENCODE dbSUPER 650.7 +0.6 590 1.5 POLR2A EZH2 SETDB1 LNCPRESS1 LOC101927746
GH07J101153 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.7 -143.8 -143804 3.9 HDGF PKNOX1 CLOCK ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 AP1S1 NAT16 GIGYF1 SRRT STAG3L5P SERPINE1 PCOLCE PPP1R35 PILRB FIS1
GH07J101159 Enhancer 1.4 Ensembl ENCODE dbSUPER 10.4 -137.5 -137484 5.5 PKNOX1 ARID4B SIN3A GLI4 ZNF121 GLIS2 ZNF143 KLF7 FOS ZNF263 SRRT GIGYF1 AP1S1 PPP1R35 STAG3L5P MEPCE PCOLCE-AS1 NAT16 PILRB ZCWPW1
GH07J101289 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -9.1 -9073 1.8 CTCF PKNOX1 TAF1 SAP130 ZFP64 RAD21 YY1 EGR1 ZSCAN5C SCRT2 AZGP1P2 LOC101927746 COL26A1 FIS1 PILRB LNCPRESS1
GH07J101303 Enhancer 0.6 ENCODE dbSUPER 0.7 +3.8 3764 1.5 POLR2A EZH2 LOC101927746 COL26A1 FIS1 DGAT2L7P LNCPRESS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LNCPRESS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LNCPRESS1 Gene

Genomic Locations for LNCPRESS1 Gene
chr7:101,299,578-101,301,346
(GRCh38/hg38)
Size:
1,769 bases
Orientation:
Plus strand
chr7:100,942,894-100,944,551
(GRCh37/hg19)
Size:
1,658 bases
Orientation:
Plus strand

Genomic View for LNCPRESS1 Gene

Genes around LNCPRESS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LNCPRESS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LNCPRESS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LNCPRESS1 Gene

Proteins for LNCPRESS1 Gene

Post-translational modifications for LNCPRESS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LNCPRESS1 Gene

Domains & Families for LNCPRESS1 Gene

Gene Families for LNCPRESS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LNCPRESS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LNCPRESS1 Gene

Function for LNCPRESS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LNCPRESS1 Gene

Localization for LNCPRESS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LNCPRESS1 Gene

Pathways & Interactions for LNCPRESS1 Gene

SuperPathways for LNCPRESS1 Gene

No Data Available

Interacting Proteins for LNCPRESS1 Gene

Gene Ontology (GO) - Biological Process for LNCPRESS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LNCPRESS1 Gene

Drugs & Compounds for LNCPRESS1 Gene

No Compound Related Data Available

Transcripts for LNCPRESS1 Gene

mRNA/cDNA for LNCPRESS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LNCPRESS1 Gene

No ASD Table

Relevant External Links for LNCPRESS1 Gene

GeneLoc Exon Structure for
LNCPRESS1
ECgene alternative splicing isoforms for
LNCPRESS1

Expression for LNCPRESS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LNCPRESS1 Gene

Orthologs for LNCPRESS1 Gene

Evolution for LNCPRESS1 Gene

ENSEMBL:
Gene Tree for LNCPRESS1 (if available)
TreeFam:
Gene Tree for LNCPRESS1 (if available)

No data available for Orthologs for LNCPRESS1 Gene

Paralogs for LNCPRESS1 Gene

No data available for Paralogs for LNCPRESS1 Gene

Variants for LNCPRESS1 Gene

Sequence variations from dbSNP and Humsavar for LNCPRESS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000284444 -- 101,297,868(+) G/A upstream_transcript_variant
rs1000842164 -- 101,299,405(+) A/G upstream_transcript_variant
rs1001460404 -- 101,300,321(+) C/T intron_variant
rs1001663862 -- 101,301,266(+) G/A non_coding_transcript_variant
rs1001950430 -- 101,301,478(+) T/C downstream_transcript_variant

Additional Variant Information for LNCPRESS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LNCPRESS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LNCPRESS1 Gene

Disorders for LNCPRESS1 Gene

Additional Disease Information for LNCPRESS1

No disorders were found for LNCPRESS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LNCPRESS1 Gene

Publications for LNCPRESS1 Gene

  1. LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56. (PMID: 27912097) Jain AK … Barton MC (Molecular cell 2016) 2 3 58

Products for LNCPRESS1 Gene

Sources for LNCPRESS1 Gene

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