Aliases for LNCOC1 Gene

Subcategory (RNA class) for LNCOC1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for LNCOC1 Gene

  • LncRNA Associated With Ovarian Cancer 1 2 3 5
  • LNCOC1 2 170
  • CTD-2292P10.4 3
  • NONHSAG051451 94
  • Lnc-OC1 3

External Ids for LNCOC1 Gene

Previous GeneCards Identifiers for LNCOC1 Gene

  • GC08M142752
  • GC08M142757
  • GC08M142747

Summaries for LNCOC1 Gene

GeneCards Summary for LNCOC1 Gene

LNCOC1 (LncRNA Associated With Ovarian Cancer 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LNCOC1 include Ovarian Cancer 1.

Additional gene information for LNCOC1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LNCOC1 Gene

Genomics for LNCOC1 Gene

GeneHancer (GH) Regulatory Elements for LNCOC1 Gene

Promoters and enhancers for LNCOC1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J142725 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 -0.4 -385 3.6 ZNF785 ZNF24 ZBTB40 SP1 CTCF SREBF1 RBPJ SMARCE1 POLR2A CC2D1A THEM6 ENSG00000253806 LNCOC1 ZNF623 JRK LY6K ZNF696 ZNF707 TSNARE1 GLI4
GH08J142667 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10 +57.1 57076 5.8 ZNF24 SP1 ZBTB40 CTCF SIX5 SMARCE1 POLR2A CTBP1 HCFC1 MYC JRK PSCA LY6K ZC3H3 ENSG00000255050 EEF1D ZNF623 NAPRT SLURP1 C8orf31
GH08J143552 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 -826.0 -825985 3.6 ZBTB40 FOXA1 SMARCE1 RBPJ POLR2A NR2F1 NR2F6 NFYC ELF1 RAD21 GSDMD lnc-ZC3H3-2 ENSG00000254859 ZC3H3 NAPRT ZNF623 HSF1 MAF1 VPS28 CPSF1
GH08J142814 Enhancer 1.1 FANTOM5 ENCODE 10 -88.7 -88682 2.8 SIN3A CTCF SREBF1 RBPJ HDGF MNT MTA3 RAD21 NFIB MAFK LYNX1 ZNF623 ZNF707 EEF1D ZNF696 JRK TIGD5 LY6D TSNARE1 ENSG00000255050
GH08J143460 Enhancer 1 ENCODE dbSUPER 9.8 -735.2 -735236 3.6 SP1 NR2F6 HCFC1 ETV6 NKRF MAFK CEBPG POLR2A ZNF687 CREM ZNF623 TIGD5 SLC52A2 ZNF696 CPSF1 VPS28 JRK GPAA1 ADCK5 ZNF707
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LNCOC1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LNCOC1 Gene

Genomic Locations for LNCOC1 Gene
chr8:142,688,219-142,727,016
(GRCh38/hg38)
Size:
38,798 bases
Orientation:
Minus strand
chr8:143,783,670-143,808,391
(GRCh37/hg19)
Size:
24,722 bases
Orientation:
Minus strand

Genomic View for LNCOC1 Gene

Genes around LNCOC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LNCOC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LNCOC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LNCOC1 Gene

Proteins for LNCOC1 Gene

Post-translational modifications for LNCOC1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LNCOC1 Gene

Domains & Families for LNCOC1 Gene

Gene Families for LNCOC1 Gene

genes like me logo Genes that share domains with LNCOC1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LNCOC1 Gene

Function for LNCOC1 Gene

Phenotypes From GWAS Catalog for LNCOC1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LNCOC1 Gene

Localization for LNCOC1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LNCOC1 Gene

Pathways & Interactions for LNCOC1 Gene

PathCards logo

SuperPathways for LNCOC1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LNCOC1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LNCOC1 Gene

Drugs & Compounds for LNCOC1 Gene

No Compound Related Data Available

Transcripts for LNCOC1 Gene

mRNA/cDNA for LNCOC1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) RNACentral transcripts :
(6) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LNCOC1 Gene

No ASD Table

Relevant External Links for LNCOC1 Gene

GeneLoc Exon Structure for
LNCOC1
ECgene alternative splicing isoforms for
LNCOC1

Expression for LNCOC1 Gene

SOURCE GeneReport for Unigene cluster for LNCOC1 Gene:

Hs.716823
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LNCOC1 Gene

Orthologs for LNCOC1 Gene

Evolution for LNCOC1 Gene

ENSEMBL:
Gene Tree for LNCOC1 (if available)
TreeFam:
Gene Tree for LNCOC1 (if available)

No data available for Orthologs for LNCOC1 Gene

Paralogs for LNCOC1 Gene

No data available for Paralogs for LNCOC1 Gene

Variants for LNCOC1 Gene

Sequence variations from dbSNP and Humsavar for LNCOC1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000116237 -- 142,703,276(-) G/A non_coding_transcript_variant
rs1000454977 -- 142,702,038(-) C/T downstream_transcript_variant
rs1000505378 -- 142,701,801(-) G/A downstream_transcript_variant
rs1000778554 -- 142,708,048(-) T/G intron_variant
rs1000782449 -- 142,708,820(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LNCOC1 Gene

Variant ID Type Subtype PubMed ID
esv1008011 CNV deletion 20482838
esv2661137 CNV deletion 23128226
esv2737925 CNV deletion 23290073
nsv1023021 CNV loss 25217958
nsv428207 CNV gain+loss 18775914
nsv824757 CNV gain 20364138
nsv831485 CNV loss 17160897
nsv831486 CNV gain 17160897

Additional Variant Information for LNCOC1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LNCOC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LNCOC1 Gene

Disorders for LNCOC1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LNCOC1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
ovarian cancer 1
  • ovarian cancer
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LNCOC1

genes like me logo Genes that share disorders with LNCOC1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LNCOC1 Gene

Publications for LNCOC1 Gene

  1. A novel lncRNA, Lnc-OC1, promotes ovarian cancer cell proliferation and migration by sponging miR-34a and miR-34c. (PMID: 29576507) Tao F … Zhang Z (Journal of genetics and genomics = Yi chuan xue bao 2018) 2 3 56

Products for LNCOC1 Gene

Sources for LNCOC1 Gene