Aliases for LNCAROD Gene
Subcategory (RNA class) for LNCAROD Gene
lncRNA
Quality Score for this RNA gene is
15
Aliases for LNCAROD Gene
External Ids for LNCAROD Gene
- HGNC: 50913
- Entrez Gene: 101928687
- Ensembl: ENSG00000231131
Previous HGNC Symbols for LNCAROD Gene
- LINC01468
Summaries for LNCAROD Gene
GeneCards Summary for LNCAROD Gene
LNCAROD (LncRNA Activating Regulator Of DKK1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LNCAROD include Tongue Squamous Cell Carcinoma.
Additional gene information for LNCAROD Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LNCAROD Gene
Genomics for LNCAROD Gene
GeneHancer (GH) Regulatory Elements for LNCAROD Gene
Promoters and enhancers for LNCAROD Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH10J052753 | Promoter/Enhancer | 1.2 | Ensembl ENCODE | 750.6 | +0.8 | 828 | 2.8 | MLX NR2F6 ATF1 MIXL1 MYC HLF MAX RERE ELF3 SP1 | LNCAROD LOC105378305 THAP12P3 MBL2 piR-59193 lnc-DKK1-5 | |
| GH10J052439 | Promoter/Enhancer | 1.8 | FANTOM5 Ensembl ENCODE dbSUPER | 14 | +307.5 | 307529 | 16.8 | SIN3A GATA3 TCF7L2 NR2F6 ATF1 ZNF217 CREB1 MIXL1 HLF NFIB | LNCAROD DKK1 PRKG1-AS1 lnc-DKK1-5 | |
| GH10J052436 | Enhancer | 0.7 | Ensembl ENCODE dbSUPER | 14.3 | +318.1 | 318112 | 2.7 | IKZF1 IKZF2 ATF7 | LNCAROD PRKG1-AS1 lnc-DKK1-5 | |
| GH10J052470 | Enhancer | 1 | Ensembl ENCODE dbSUPER | 10.3 | +283.9 | 283909 | 4.1 | TCF7L2 ZNF217 HLF MNT ZBTB33 NCOA3 CTBP1 REST SP1 PKNOX1 | LNCAROD lnc-DKK1-5 PRKG1-AS1 | |
| GH10J052484 | Enhancer | 1.2 | FANTOM5 Ensembl ENCODE dbSUPER | 8.1 | +268.8 | 268822 | 5.4 | CTCF RAD21 POLR2A CEBPB JUN JUND EP300 RFX5 SMC3 USF2 | lnc-DKK1-5 DKK1 PRKG1-AS1 LNCAROD |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LNCAROD on UCSC Golden Path with GeneCards custom track
Genomic Locations for LNCAROD Gene
Genomic Locations for LNCAROD Gene
- chr10:52,444,025-52,755,544
- (GRCh38/hg38)
- Size:
- 311,520 bases
- Orientation:
- Minus strand
- chr10:54,210,634-54,230,293
- (GRCh37/hg19)
- Size:
- 19,660 bases
- Orientation:
- Minus strand
Genomic View for LNCAROD Gene
Genes around LNCAROD on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 10q21.1 by HGNC
- 10q21.1 by Entrez Gene
- 10q21.1 by Ensembl
LNCAROD Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LNCAROD Gene
Proteins for LNCAROD Gene
Post-translational modifications for LNCAROD Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LNCAROD
- Origene Custom Protein Services for LNCAROD
No data available for DME Specific Peptides for LNCAROD Gene
Domains & Families for LNCAROD Gene
Gene Families for LNCAROD Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LNCAROD Gene
Function for LNCAROD Gene
Phenotypes From GWAS Catalog for LNCAROD Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LNCAROD Gene
Localization for LNCAROD Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LNCAROD Gene
Transcripts for LNCAROD Gene
mRNA/cDNA for LNCAROD Gene
- (2) REFSEQ mRNAs :
- (2) Additional mRNA sequences :
- (6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000435813 975 bps (ENST00000435813.6)
- ENST00000422763 570 bps (ENST00000422763.1)
- ENST00000647908 815 bps (ENST00000647908.1)
- ENST00000448017 721 bps (ENST00000448017.1)
- ENST00000443523 372 bps (ENST00000443523.1)
- (19) RNACentral transcripts :
- (13) LncBook transcripts :
- (13) LNCipedia transcripts :
- (10) NONCODE transcripts :
CRISPR Products
- Browse CRISPR knockouts for LNCAROD
miRNA Products
Inhibitory RNA Products
Clone Products
Expression for LNCAROD Gene
NURSA nuclear receptor signaling pathways regulating expression of LNCAROD Gene:
LNCAROD
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LNCAROD Gene
Orthologs for LNCAROD Gene
No data available for Orthologs for LNCAROD Gene
Paralogs for LNCAROD Gene
No data available for Paralogs for LNCAROD Gene
Variants for LNCAROD Gene
| SNP ID | Clin | Chr 10 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000157378 | -- | 52,470,283(-) | G/T | genic_upstream_transcript_variant, intron_variant | |
| rs1000332637 | -- | 52,457,644(-) | A/T | genic_upstream_transcript_variant, intron_variant | |
| rs1000410089 | -- | 52,464,765(-) | G/A | genic_upstream_transcript_variant, intron_variant | |
| rs1000425287 | -- | 52,462,017(-) | A/G | genic_upstream_transcript_variant, intron_variant | |
| rs1000570168 | -- | 52,471,377(-) | G/A | upstream_transcript_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv130e214 | CNV | gain | 21293372 |
Additional Variant Information for LNCAROD Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LNCAROD
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LNCAROD Gene
Disorders for LNCAROD Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| tongue squamous cell carcinoma |
|
|
Search LNCAROD in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LNCAROD
No data available for UniProtKB/Swiss-Prot and Genatlas for LNCAROD Gene
Publications for LNCAROD Gene
- Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin. (PMID: 29691407) Ntini E … Ørom UAV (Nature communications 2018) 2 3 56
- Long non-coding RNA deregulation in tongue squamous cell carcinoma. (PMID: 25045670) Gao W … Wong TS (BioMed research international 2014) 2 3 56
ExternalLinks
Products for LNCAROD Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LNCAROD
- Origene Custom Protein Services for LNCAROD
- Browse OriGene Inhibitory RNA Products For LNCAROD
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LNCAROD
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LNCAROD
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LNCAROD
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LNCAROD
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LNCAROD
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LNCAROD
Sources for LNCAROD Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) CGAP SAGE
- (31) SOURCE
- (32) HomoloGene
- (33) PanEnsembl
- (34) euGenes
- (35) SGD
- (36) FlyBase
- (37) WormBase
- (38) Pseudogene
- (39) DGV
- (40) dbSNP
- (41) GenAtlas
- (42) HGMD
- (43) GAD
- (44) BGMUT
- (45) HuGE
- (46) Atlas
- (47) GenBank
- (48) H-invDB
- (49) HORDE
- (50) HUGE
- (51) IMGT
- (52) Leiden
- (53) miRBase
- (54) DME
- (55) OriGene
- (56) PubMed
- (57) R&D Systems
- (58) TGDB
- (59) Tocris
- (60) Abcam
- (61) Novus Biologicals
- (62) ProSpec
- (63) Sino Biological
- (64) GenScript
- (65) Qiagen
- (66) OCA
- (67) Proteopedia
- (68) MOPED
- (69) neXtProt
- (70) Reactome
- (71) GeneGo (Thomson Reuters)
- (72) DISEASES
- (73) SIMAP
- (74) GenomeRNAi
- (75) LifeMap
- (76) miRTarBase
- (77) MalaCards
- (78) Invitrogen
- (79) BitterDB
- (80) ESI-BIO
- (81) RefSeq
- (82) BioSystems
- (83) MaxQB
- (84) IUPHAR
- (85) BioGPS
- (86) Illumina
- (87) COMPARTMENTS
- (88) HOMER
- (89) PaxDb
- (90) ApexBio
- (91) Addgene
- (92) antibodies-online
- (93) CYP
- (94) NONCODE
- (95) TreeFam
- (96) PathCards
- (97) GeneReviews
- (98) GeneTex
- (99) Taconic Biosciences
- (100) GTEx
- (101) ProteomicsDB
- (102) SCBT
- (103) DGIdb
- (104) ClinicalTrials
- (105) RVIS
- (106) SIGNOR
- (107) diseasecard
- (108) NIH Rare Diseases
- (109) Orphanet
- (110) UMLS
- (111) GTR
- (112) Disease Ontology
- (113) Genetics Home Reference
- (114) MeSH
- (115) MedlinePlus
- (116) CDC
- (117) NINDS
- (118) NCBI Bookshelf
- (119) ClinVar
- (120) Gene Damage Index
- (121) HPO
- (122) UDN
- (123) VISTA
- (124) FANTOM5
- (125) ENCODE
- (126) ProSci
- (127) Horizon
- (128) NURSA
- (129) IID
- (130) VectorBuilder
- (131) SNPedia
- (132) BRCA Exchange
- (133) CIViC
- (134) ProteoGenix
- (135) dbSUPER
- (136) TISSUES
- (137) Gene ORGANizer
- (138) abm
- (139) Human Protein Atlas
- (140) GWAS Catalog
- (141) Monarch Initiative
- (142) DataMed
- (143) HumanCyc
- (144) genomics-online
- (145) UCNEbase
- (146) EPDnew
- (147) Applied Biosystems
- (148) GlyConnect
- (149) Aminode
- (150) GeneCopoeia
- (151) GPS-Prot
- (152) RNACentral
- (153) LncRNADisease
- (154) LOVD
- (155) miR2Disease
- (156) DiseaseEnhancer
- (157) Boster Bio
- (158) Biorbyt
- (159) Biocompare
- (160) Mastermind
- (161) CTD^2 Dashboard
- (162) CraniofacialAtlas
- (163) GeneImprint
- (164) Synthego
- (165) Bio Basic
- (166) ENA
- (167) GtRNAdb
- (168) LncBase
- (169) LncBook
- (170) LNCipedia
- (171) LncRNAdb
- (172) Modomics
- (173) PDBe
- (174) Rfam
- (175) SILVA
- (176) snOPY
- (177) SRPDB
- (178) GENCODE
- (179) TarBase
- (180) MyBioSource