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Aliases for LNCAROD Gene

Subcategory (RNA class) for LNCAROD Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LNCAROD Gene

  • LncRNA Activating Regulator Of DKK1 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1468 2 3
  • Activating Regulator Of DKK1 2 3
  • Lnc-MBL2-4 3
  • LINC01468 3
  • A-ROD 3

External Ids for LNCAROD Gene

Previous HGNC Symbols for LNCAROD Gene

  • LINC01468

Summaries for LNCAROD Gene

GeneCards Summary for LNCAROD Gene

LNCAROD (LncRNA Activating Regulator Of DKK1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LNCAROD include Tongue Squamous Cell Carcinoma and Tongue Disease.

Additional gene information for LNCAROD Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LNCAROD Gene

Genomics for LNCAROD Gene

GeneHancer (GH) Regulatory Elements for LNCAROD Gene

Promoters and enhancers for LNCAROD Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J052753 Promoter/Enhancer 1.4 Ensembl ENCODE 600.7 +0.9 854 3.1 ELF3 CEBPG RERE ZNF24 TFE3 SP1 HNF1A PPARG ZNF644 KAT8 LNCAROD LOC105378305 THAP12P3 MBL2 GC10M052739
GH10J052447 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 13.1 +303.6 303567 9.1 ELF3 CEBPG RERE TFE3 ELF1 POLR2A HNF1A PPARG FOSL2 SOX13 LNCAROD THAP12P3 GC10P052631
GH10J052439 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 14 +312.1 312149 7.3 NFIB MAFK POLR2A CREB1 TARDBP ATF7 REST CTBP1 CEBPB JUN LNCAROD DKK1 THAP12P3 GC10P052631
GH10J052436 Enhancer 0.8 Ensembl ENCODE dbSUPER 14.2 +318.0 317977 2.7 IKZF1 IKZF2 ATF7 LNCAROD THAP12P3 GC10P052631
GH10J052470 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.3 +283.8 283774 4.1 NCOA3 REST CTBP1 SP1 PKNOX1 CHD1 ZNF217 DPF2 GATAD2B FOSL2 LNCAROD THAP12P3 GC10P052631
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LNCAROD on UCSC Golden Path with GeneCards custom track

Genomic Locations for LNCAROD Gene

Genomic Locations for LNCAROD Gene
chr10:52,450,874-52,755,409
(GRCh38/hg38)
Size:
304,536 bases
Orientation:
Minus strand
chr10:54,210,634-54,230,293
(GRCh37/hg19)
Size:
19,660 bases
Orientation:
Minus strand

Genomic View for LNCAROD Gene

Genes around LNCAROD on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LNCAROD Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LNCAROD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LNCAROD Gene

Proteins for LNCAROD Gene

Post-translational modifications for LNCAROD Gene

No Post-translational modifications

No data available for DME Specific Peptides for LNCAROD Gene

Domains & Families for LNCAROD Gene

Gene Families for LNCAROD Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LNCAROD: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LNCAROD Gene

Function for LNCAROD Gene

Phenotypes From GWAS Catalog for LNCAROD Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LNCAROD Gene

Localization for LNCAROD Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LNCAROD Gene

Pathways & Interactions for LNCAROD Gene

PathCards logo

SuperPathways for LNCAROD Gene

No Data Available

Interacting Proteins for LNCAROD Gene

Gene Ontology (GO) - Biological Process for LNCAROD Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LNCAROD Gene

Drugs & Compounds for LNCAROD Gene

No Compound Related Data Available

Transcripts for LNCAROD Gene

mRNA/cDNA for LNCAROD Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LNCAROD Gene

No ASD Table

Relevant External Links for LNCAROD Gene

GeneLoc Exon Structure for
LNCAROD
ECgene alternative splicing isoforms for
LNCAROD

Expression for LNCAROD Gene

NURSA nuclear receptor signaling pathways regulating expression of LNCAROD Gene:

LNCAROD
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LNCAROD Gene

Orthologs for LNCAROD Gene

Evolution for LNCAROD Gene

ENSEMBL:
Gene Tree for LNCAROD (if available)
TreeFam:
Gene Tree for LNCAROD (if available)

No data available for Orthologs for LNCAROD Gene

Paralogs for LNCAROD Gene

No data available for Paralogs for LNCAROD Gene

Variants for LNCAROD Gene

Sequence variations from dbSNP and Humsavar for LNCAROD Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000157378 -- 52,470,283(-) G/T genic_upstream_transcript_variant, intron_variant
rs1000332637 -- 52,457,644(-) A/T genic_upstream_transcript_variant, intron_variant
rs1000410089 -- 52,464,765(-) G/A genic_upstream_transcript_variant, intron_variant
rs1000425287 -- 52,462,017(-) A/G genic_upstream_transcript_variant, intron_variant
rs1000570168 -- 52,471,377(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LNCAROD Gene

Variant ID Type Subtype PubMed ID
dgv130e214 CNV gain 21293372

Additional Variant Information for LNCAROD Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LNCAROD

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LNCAROD Gene

Disorders for LNCAROD Gene

MalaCards: The human disease database

(2) MalaCards diseases for LNCAROD Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
tongue squamous cell carcinoma
  • squamous cell carcinoma of tongue
tongue disease
  • abnormality of the tongue
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LNCAROD: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LNCAROD Gene

Publications for LNCAROD Gene

  1. Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin. (PMID: 29691407) Ntini E … Ørom UAV (Nature communications 2018) 2 3 58
  2. Long non-coding RNA deregulation in tongue squamous cell carcinoma. (PMID: 25045670) Gao W … Wong TS (BioMed research international 2014) 2 3 58

Products for LNCAROD Gene

Sources for LNCAROD Gene

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