Aliases for LNCAROD Gene

Subcategory (RNA class) for LNCAROD Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LNCAROD Gene

  • LncRNA Activating Regulator Of DKK1 2 3 5
  • LNCAROD 2 5 165
  • Long Intergenic Non-Protein Coding RNA 1468 2 3
  • Activating Regulator Of DKK1 2 3
  • Lnc-MBL2-4 2 3
  • A-ROD 2 3
  • NONHSAG005923.2 91
  • NONHSAG005924.2 91
  • HSALNG0078013 164
  • Lnc-MBL2-3 165
  • LINC01468 3

External Ids for LNCAROD Gene

Previous HGNC Symbols for LNCAROD Gene

  • LINC01468

Summaries for LNCAROD Gene

GeneCards Summary for LNCAROD Gene

LNCAROD (LncRNA Activating Regulator Of DKK1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LNCAROD Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LNCAROD Gene

Genomics for LNCAROD Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LNCAROD Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J052439 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 614 +307.5 307492 16.8 CREB1 GATAD2A ATF7 TFE3 SOX13 RCOR2 TARDBP FOXA1 POLR2A RXRB LNCAROD DKK1 PRKG1-AS1 lnc-DKK1-5 MBL2
GH10J052753 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 600.7 +0.8 791 2.8 GATAD2A ATF7 TFE3 SOX13 RCOR2 RBFOX2 RXRB CEBPA ETS1 TCF7 LNCAROD LOC105378305 THAP12P3 MBL2 piR-59193 lnc-DKK1-5 DKK1
GH10J052436 Enhancer 0.8 Ensembl ENCODE dbSUPER 14.2 +318.1 318075 2.7 IKZF2 RELB TBX21 ATF7 IKZF1 LNCAROD PRKG1-AS1 lnc-DKK1-5 DKK1 MBL2
GH10J052470 Enhancer 1 Ensembl ENCODE dbSUPER 10.3 +283.9 283872 4.1 ZHX2 REST SP1 CTBP1 PKNOX1 CHD1 ZNF217 GATAD2B FOSL2 GATA3 LNCAROD lnc-DKK1-5 PRKG1-AS1 DKK1 MBL2
GH10J052484 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 8.1 +268.8 268785 5.4 CTCF RAD21 JUND CEBPB JUN SMC3 EP300 FOSL2 RFX5 BHLHE40 lnc-DKK1-5 DKK1 PRKG1-AS1 LNCAROD MBL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LNCAROD on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LNCAROD Gene

Genomic Locations for LNCAROD Gene
chr10:52,444,025-52,755,507
(GRCh38/hg38)
Size:
311,483 bases
Orientation:
Minus strand
chr10:54,210,634-54,230,293
(GRCh37/hg19)
Size:
19,660 bases
Orientation:
Minus strand

Genomic View for LNCAROD Gene

Genes around LNCAROD on UCSC Golden Path with GeneCards custom track
LNCAROD in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LNCAROD Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LNCAROD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LNCAROD Gene

Proteins for LNCAROD Gene

Post-translational modifications for LNCAROD Gene

No Post-translational modifications

No data available for DME Specific Peptides for LNCAROD Gene

Domains & Families for LNCAROD Gene

Gene Families for LNCAROD Gene

genes like me logo Genes that share domains with LNCAROD: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LNCAROD Gene

Function for LNCAROD Gene

Phenotypes From GWAS Catalog for LNCAROD Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LNCAROD Gene

Localization for LNCAROD Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LNCAROD gene
Compartment Confidence
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LNCAROD Gene

Pathways & Interactions for LNCAROD Gene

PathCards logo

SuperPathways for LNCAROD Gene

No Data Available

Gene Ontology (GO) - Biological Process for LNCAROD Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LNCAROD Gene

Drugs & Compounds for LNCAROD Gene

No Compound Related Data Available

Transcripts for LNCAROD Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LNCAROD Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075CC38_9606 lncRNA 1007 4

HGNC: 50913,

RefSeq: NR_120641,

LncBook: HSALNT0162774,

LNCipedia: LNCAROD:13,

URS000060D7D9_9606 lncRNA 975 4

Ensembl: ENST00000435813 (view in UCSC) ,

LncBook: HSALNT0162771,

LNCipedia: LNCAROD:21,

NONCODE: NONHSAT013427.2,

URS0000255667_9606 lncRNA 570 4

Ensembl: ENST00000422763 (view in UCSC) ,

LncBook: HSALNT0162777,

LNCipedia: LNCAROD:12,

NONCODE: NONHSAT013428.2,

URS000075E923_9606 lncRNA 972 3

RefSeq: NR_120642,

LncBook: HSALNT0162775,

LNCipedia: LNCAROD:19,

URS0000EEB8A1_9606 lncRNA 1388 1

Ensembl: ENST00000657963 (view in UCSC) ,

LNCAROD in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LNCAROD Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LNCAROD Gene

No ASD Table

Relevant External Links for LNCAROD Gene

GeneLoc Exon Structure for
LNCAROD

Expression for LNCAROD Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LNCAROD

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LNCAROD Gene

Orthologs for LNCAROD Gene

Evolution for LNCAROD Gene

ENSEMBL:
Gene Tree for LNCAROD (if available)
TreeFam:
Gene Tree for LNCAROD (if available)

No data available for Orthologs for LNCAROD Gene

Paralogs for LNCAROD Gene

No data available for Paralogs for LNCAROD Gene

Variants for LNCAROD Gene

Additional dbSNP identifiers (rs#s) for LNCAROD Gene

Structural Variations from Database of Genomic Variants (DGV) for LNCAROD Gene

Variant ID Type Subtype PubMed ID
dgv130e214 CNV gain 21293372

Additional Variant Information for LNCAROD Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LNCAROD

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LNCAROD Gene

Disorders for LNCAROD Gene

No disorders were found for LNCAROD Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LNCAROD Gene

Publications for LNCAROD Gene

  1. Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin. (PMID: 29691407) Ntini E … Ørom UAV (Nature communications 2018) 2 3
  2. Long non-coding RNA deregulation in tongue squamous cell carcinoma. (PMID: 25045670) Gao W … Wong TS (BioMed research international 2014) 2 3

Products for LNCAROD Gene

Sources for LNCAROD Gene