Aliases for LMX1A-AS2 Gene

Subcategory (RNA class) for LMX1A-AS2 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LMX1A-AS2 Gene

  • LMX1A Antisense RNA 2 2 3 5
  • LMX1A-AS2 2 5
  • NONHSAG003331.2 91
  • HSALNG0008128 164

External Ids for LMX1A-AS2 Gene

Summaries for LMX1A-AS2 Gene

GeneCards Summary for LMX1A-AS2 Gene

LMX1A-AS2 (LMX1A Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LMX1A-AS2 include Deafness, Autosomal Dominant 7.

Additional gene information for LMX1A-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LMX1A-AS2 Gene

Genomics for LMX1A-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LMX1A-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J165258 Enhancer 0.8 Ensembl 11 +54.8 54820 1.9 GATAD2A CTCF ZNF629 RFX1 RFX5 JUND FOXA1 REST ZNF24 SP1 LMX1A LMX1A-AS2 HSALNG0008130 HSALNG0008131 PBX1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LMX1A-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LMX1A-AS2 Gene

Genomic Locations for LMX1A-AS2 Gene
chr1:165,204,047-165,213,091
(GRCh38/hg38)
Size:
9,045 bases
Orientation:
Plus strand
chr1:165,179,864-165,182,327
(GRCh37/hg19)
Size:
2,464 bases
Orientation:
Plus strand

Genomic View for LMX1A-AS2 Gene

Genes around LMX1A-AS2 on UCSC Golden Path with GeneCards custom track
LMX1A-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LMX1A-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LMX1A-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LMX1A-AS2 Gene

Proteins for LMX1A-AS2 Gene

Post-translational modifications for LMX1A-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LMX1A-AS2 Gene

Domains & Families for LMX1A-AS2 Gene

Gene Families for LMX1A-AS2 Gene

genes like me logo Genes that share domains with LMX1A-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LMX1A-AS2 Gene

Function for LMX1A-AS2 Gene

Phenotypes From GWAS Catalog for LMX1A-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LMX1A-AS2 Gene

Localization for LMX1A-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LMX1A-AS2 Gene

Pathways & Interactions for LMX1A-AS2 Gene

PathCards logo

SuperPathways for LMX1A-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LMX1A-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LMX1A-AS2 Gene

Drugs & Compounds for LMX1A-AS2 Gene

No Compound Related Data Available

Transcripts for LMX1A-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LMX1A-AS2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004A38AF_9606 lncRNA 692 4

HGNC: 40343,

Ensembl: ENST00000457106 (view in UCSC) ,

LncBook: HSALNT0016825,

NONCODE: NONHSAT007299.2,

URS00009AED19_9606 lncRNA 1059 1

NONCODE: NONHSAT149995.1,

LMX1A-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LMX1A-AS2 Gene

No ASD Table

Relevant External Links for LMX1A-AS2 Gene

GeneLoc Exon Structure for
LMX1A-AS2

No data available for mRNA/cDNA for LMX1A-AS2 Gene

Expression for LMX1A-AS2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LMX1A-AS2 Gene

Orthologs for LMX1A-AS2 Gene

Evolution for LMX1A-AS2 Gene

ENSEMBL:
Gene Tree for LMX1A-AS2 (if available)
TreeFam:
Gene Tree for LMX1A-AS2 (if available)

No data available for Orthologs for LMX1A-AS2 Gene

Paralogs for LMX1A-AS2 Gene

No data available for Paralogs for LMX1A-AS2 Gene

Variants for LMX1A-AS2 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LMX1A-AS2 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
777953 Benign: not provided 165,205,901(+) G/A SYNONYMOUS_VARIANT
812515 Pathogenic: Deafness, autosomal dominant 7 165,210,725(+) C/G MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for LMX1A-AS2 Gene

Additional Variant Information for LMX1A-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LMX1A-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LMX1A-AS2 Gene

Disorders for LMX1A-AS2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LMX1A-AS2 Gene - From: GeneCards

Disorder Aliases PubMed IDs
deafness, autosomal dominant 7
  • dfna7
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LMX1A-AS2: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LMX1A-AS2 Gene

Publications for LMX1A-AS2 Gene

No publications were found for LMX1A-AS2 Gene.

No data available for Mastermind for LMX1A-AS2 Gene

Products for LMX1A-AS2 Gene

Sources for LMX1A-AS2 Gene