Aliases for LMTK3 Gene
Aliases for LMTK3 Gene
External Ids for LMTK3 Gene
- HGNC: 19295
- Entrez Gene: 114783
- Ensembl: ENSG00000142235
- UniProtKB: Q96Q04
Previous GeneCards Identifiers for LMTK3 Gene
- GC19M053680
- GC19M048988
- GC19M045368
Summaries for LMTK3 Gene
GeneCards Summary for LMTK3 Gene
LMTK3 (Lemur Tyrosine Kinase 3) is a Protein Coding gene. Among its related pathways are ERK Signaling and Akt Signaling. Gene Ontology (GO) annotations related to this gene include transferase activity, transferring phosphorus-containing groups and protein tyrosine kinase activity. An important paralog of this gene is AATK.
UniProtKB/Swiss-Prot for LMTK3 Gene
-
Protein kinase which phosphorylates ESR1 (in vitro) and protects it against proteasomal degradation. May also regulate ESR1 levels indirectly via a PKC-AKT-FOXO3 pathway where it decreases the activity of PKC and the phosphorylation of AKT, thereby increasing binding of transcriptional activator FOXO3 to the ESR1 promoter and increasing ESR1 transcription (PubMed:21602804). Involved in endocytic trafficking of N-methyl-D-aspartate receptors (NMDAR) in neurons (By similarity).
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LMTK3 Gene
Genomics for LMTK3 Gene
GeneHancer (GH) Regulatory Elements for LMTK3 Gene
Promoters and enhancers for LMTK3 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around LMTK3 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for LMTK3 Gene
Genomic Locations for LMTK3 Gene
- chr19:48,485,271-48,513,905
- (GRCh38/hg38)
- Size:
- 28,635 bases
- Orientation:
- Minus strand
- chr19:48,988,528-49,016,446
- (GRCh37/hg19)
Genomic View for LMTK3 Gene
Genes around LMTK3 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19q13.33 by Entrez Gene
- 19q13.33 by HGNC
- 19q13.33 by Ensembl
LMTK3 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LMTK3 Gene
Proteins for LMTK3 Gene
-
Protein details for LMTK3 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q96Q04-LMTK3_HUMAN
- Recommended name:
- Serine/threonine-protein kinase LMTK3
- Protein Accession:
- Q96Q04
- Q4G0U1
Protein attributes for LMTK3 Gene
- Size:
- 1460 amino acids
- Molecular mass:
- 153661 Da
- Cofactor:
- Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
- Quaternary structure:
-
- Interacts with ESR1 (PubMed:21602804). Interacts with AP-2 complex subunit alpha (By similarity).
- SequenceCaution:
-
- Sequence=AAH36690.1; Type=Frameshift; Positions=809; Evidence={ECO:0000305}; Sequence=BAB67776.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
Protein Expression for LMTK3 Gene
Post-translational modifications for LMTK3 Gene
Other Protein References for LMTK3 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
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-
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-
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Protein Products
-
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Assay Products
No data available for DME Specific Peptides for LMTK3 Gene
Domains & Families for LMTK3 Gene
Gene Families for LMTK3 Gene
- HGNC:
- IUPHAR :
- Human Protein Atlas (HPA):
-
- Enzymes
- Predicted membrane proteins
Protein Domains for LMTK3 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for LMTK3 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q96Q04UniProtKB/Swiss-Prot:
LMTK3_HUMAN :- Belongs to the protein kinase superfamily. Tyr protein kinase family.
- Family:
-
- Belongs to the protein kinase superfamily. Tyr protein kinase family.
Function for LMTK3 Gene
Molecular function for LMTK3 Gene
- UniProtKB/Swiss-Prot Function:
- Protein kinase which phosphorylates ESR1 (in vitro) and protects it against proteasomal degradation. May also regulate ESR1 levels indirectly via a PKC-AKT-FOXO3 pathway where it decreases the activity of PKC and the phosphorylation of AKT, thereby increasing binding of transcriptional activator FOXO3 to the ESR1 promoter and increasing ESR1 transcription (PubMed:21602804). Involved in endocytic trafficking of N-methyl-D-aspartate receptors (NMDAR) in neurons (By similarity).
- UniProtKB/Swiss-Prot CatalyticActivity:
- ATP + a protein = ADP + a phosphoprotein.
Enzyme Numbers (IUBMB) for LMTK3 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000166 | nucleotide binding | IEA | -- |
| GO:0003674 | molecular_function | ND | -- |
| GO:0004672 | protein kinase activity | IEA | -- |
| GO:0004674 | protein serine/threonine kinase activity | IEA | -- |
| GO:0005524 | ATP binding | IEA | -- |
Phenotypes for LMTK3 Gene
- MGI mutant phenotypes for LMTK3:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for LMTK3:
-
- Decreased substrate adherent cell growth
- Decreased CYP1A1 activity after TCDD stimulation
- Dynamic nuclei (hole, folded or small irregular)
- Moderately decreased NFAT1-GFP nuclear translocation
- Increased cell death HMECs cells
- Decreased viability of wild-type and TP53 knockout cells, decreased TP53 protein expression ratio (wild-type / TP53 knockout cells)
- Decreased ionizing radiation sensitivity
- Downregulation of Wnt pathway after Wnt3A stimulation
- Decreased Hepatitis C Virus pseudoparticles (HCVpp; H77; genotype 1a) infection
- Decreased viability
- Increased cell migration
- Decreased cell migration
- Increased caspase activity
- Increased vaccinia virus (VACV) infection
- Increased gamma-H2AX phosphorylation
- shRNA abundance <= 50%
- Synthetic lethal with vaccinia virus (VACV) infection
Animal Models for LMTK3 Gene
- MGI Knock Outs for LMTK3:
-
- Lmtk3 Lmtk3<tm1Tya>
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
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-
CRISPR Products
-
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- genomics-online: gRNA clones - Search results for 55 available LMTK3 gene related products
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- Applied Biological Materials CRISPR for LMTK3
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for LMTK3
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miRNA for LMTK3 Gene
- miRTarBase miRNAs that target LMTK3
miRNA Products
Inhibitory RNA Products
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- Overview of 55 available LMTK3 gene related products
Clone Products
- VectorBuilder custom plasmid, inducible vectors for LMTK3
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-
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- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LMTK3
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-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Phenotypes From GWAS Catalog , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for LMTK3 Gene
Localization for LMTK3 Gene
Subcellular locations from UniProtKB/Swiss-Prot for LMTK3 Gene
- Membrane; Single-pass membrane protein. Cell projection, axon. Cell projection, dendrite. Golgi apparatus membrane. Note=Punctate pattern in cell projections.
| Compartment | Confidence |
|---|---|
| golgi apparatus | 4 |
| plasma membrane | 3 |
| extracellular | 1 |
| endoplasmic reticulum | 1 |
| lysosome | 1 |
- Cell Junctions (2)
- Nucleoplasm (2)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | -- |
| GO:0005575 | cellular_component | ND | -- |
| GO:0005794 | Golgi apparatus | IEA | -- |
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | IEA | -- |
Pathways & Interactions for LMTK3 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | GPCR Pathway |
.73
.62
|
.55
|
| 2 | ERK Signaling |
.61
.58
|
.49
|
| 3 | Nanog in Mammalian ESC Pluripotency |
.61
|
.48
|
| 4 | Actin Nucleation by ARP-WASP Complex |
.41
|
|
| 5 | Activation of cAMP-Dependent PKA | ||
Pathways by source for LMTK3 Gene
Interacting Proteins for LMTK3 Gene
GPS-Prot Interaction Network for LMTK3
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006468 | protein phosphorylation | IEA | -- |
| GO:0010923 | negative regulation of phosphatase activity | IDA | 19389623 |
| GO:0016310 | phosphorylation | IEA | -- |
No data available for SIGNOR curated interactions for LMTK3 Gene
Transcripts for LMTK3 Gene
mRNA/cDNA for LMTK3 Gene
- (20) Selected AceView cDNA sequences:
- (3) Additional mRNA sequences :
- (3) REFSEQ mRNAs :
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000270238 4972 bps (uc002pjk.3)
- ENST00000600059 5113 bps (uc061aua.1)
Unigene Clusters for LMTK3 Gene
- Lemur tyrosine kinase 3:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for LMTK3
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- genomics-online: gRNA clones - Search results for 55 available LMTK3 gene related products
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- Applied Biological Materials CRISPR for LMTK3
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for LMTK3
- GenScript: Design CRISPR guide RNA sequences for LMTK3
miRNA Products
Inhibitory RNA Products
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- Overview of 55 available LMTK3 gene related products
Clone Products
- VectorBuilder custom plasmid, inducible vectors for LMTK3
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LMTK3
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LMTK3
- Applied Biological Materials Clones for LMTK3
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for LMTK3 Gene
mRNA differential expression in normal tissues according to GTEx for LMTK3 Gene
This gene is overexpressed in Brain - Cortex (x5.1), Brain - Nucleus accumbens (basal ganglia) (x5.1), Brain - Putamen (basal ganglia) (x4.6), Brain - Frontal Cortex (BA9) (x4.2), and Brain - Caudate (basal ganglia) (x4.2).
This gene is overexpressed in Fetal Brain (30.3), Serum (22.6), and Frontal cortex (11.9).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LMTK3 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of LMTK3 Gene:
LMTK3SOURCE GeneReport for Unigene cluster for LMTK3 Gene:
Hs.207426Evidence on tissue expression from TISSUES for LMTK3 Gene
- Nervous system(4.3)
Primer Products
-
OriGene qPCR primer pairs for LMTK3
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Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for LMTK3 Gene
Orthologs for LMTK3 Gene
This gene was present in the common ancestor of eukaryotes.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | LMTK3 34 33 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | LMTK3 34 33 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | LMTK3 34 33 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | LMTK3 34 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | Lmtk3 16 34 33 |
|
||
| rat (Rattus norvegicus) |
Mammalia | LOC691056 33 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | LMTK3 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | lmtk3 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | LMTK3 34 |
|
OneToOne | |
| rice (Oryza sativa) |
Liliopsida | Os.46789 33 |
|
- Species where no ortholog for LMTK3 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Evolution for LMTK3 Gene
- ENSEMBL:
- Gene Tree for LMTK3 (if available)
- TreeFam:
- Gene Tree for LMTK3 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for LMTK3: view image
Paralogs for LMTK3 Gene
(6) SIMAP similar genes for LMTK3 Gene using alignment to 1 proteins:
- LMTK3_HUMAN
Variants for LMTK3 Gene
| SNP ID | Clin | Chr 19 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000036197 | -- | 48,514,091(-) | G/C | upstream_transcript_variant | |
| rs1000102552 | -- | 48,502,385(-) | T/A | intron_variant | |
| rs1000107611 | -- | 48,515,673(-) | T/C | upstream_transcript_variant | |
| rs1000257394 | -- | 48,496,217(-) | C/T | intron_variant | |
| rs1000305799 | -- | 48,501,632(-) | C/T | intron_variant |
Gene Damage Index Score:
2.92;
49.00% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for LMTK3 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LMTK3 Gene
Disorders for LMTK3 Gene
Additional Disease Information for LMTK3
No disorders were found for LMTK3 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LMTK3 Gene
Publications for LMTK3 Gene
- Kinome screening for regulators of the estrogen receptor identifies LMTK3 as a new therapeutic target in breast cancer. (PMID: 21602804) Giamas G … Stebbing J (Nature medicine 2011) 3 4 58
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
- Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins. (PMID: 11572484) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2001) 3 4 58
- LMTK3 knockdown retards cell growth and invasion and promotes apoptosis in thyroid cancer. (PMID: 28260052) Lu L … Shen B (Molecular medicine reports 2017) 3 58
- Lemur Tyrosine Kinase-3 Suppresses Growth of Prostate Cancer Via the AKT and MAPK Signaling Pathways. (PMID: 28848113) Sun P … Xu W (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2017) 3 58
Products for LMTK3 Gene
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- VectorBuilder custom plasmid, inducible vectors for LMTK3
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- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- antibodies-online: Search results for available LMTK3 related products ranked by validation data
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- GeneTex LMTK3 Antibody for LMTK3
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Sources for LMTK3 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
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