Aliases for LMTK3 Gene
Aliases for LMTK3 Gene
External Ids for LMTK3 Gene
- HGNC: 19295
- Entrez Gene: 114783
- Ensembl: ENSG00000142235
- UniProtKB: Q96Q04
Previous GeneCards Identifiers for LMTK3 Gene
- GC19M053680
- GC19M048988
- GC19M045368
Summaries for LMTK3 Gene
GeneCards Summary for LMTK3 Gene
LMTK3 (Lemur Tyrosine Kinase 3) is a Protein Coding gene. Among its related pathways are ERK Signaling and Akt Signaling. Gene Ontology (GO) annotations related to this gene include transferase activity, transferring phosphorus-containing groups and protein tyrosine kinase activity. An important paralog of this gene is AATK.
UniProtKB/Swiss-Prot for LMTK3 Gene
-
Protein kinase which phosphorylates ESR1 (in vitro) and protects it against proteasomal degradation. May also regulate ESR1 levels indirectly via a PKC-AKT-FOXO3 pathway where it decreases the activity of PKC and the phosphorylation of AKT, thereby increasing binding of transcriptional activator FOXO3 to the ESR1 promoter and increasing ESR1 transcription (PubMed:21602804). Involved in endocytic trafficking of N-methyl-D-aspartate receptors (NMDAR) in neurons (By similarity).
No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LMTK3 Gene
Genomics for LMTK3 Gene
GeneHancer (GH) Regulatory Elements for LMTK3 Gene
Promoters and enhancers for LMTK3 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around LMTK3 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the LMTK3 gene promoter:
-
- Max
- c-Myc
- MZF-1
- AP-4
- CBF(2)
- CBF-A
- CBF-B
- CP1A
- NF-Y
- NF-YA
Regulatory Element Products
Genomic Locations for LMTK3 Gene
Genomic Locations for LMTK3 Gene
- chr19:48,485,271-48,513,905
- (GRCh38/hg38)
- Size:
- 28,635 bases
- Orientation:
- Minus strand
- chr19:48,988,528-49,016,446
- (GRCh37/hg19)
- Size:
- 27,919 bases
- Orientation:
- Minus strand
Genomic View for LMTK3 Gene
Genes around LMTK3 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19q13.33 by Entrez Gene
- 19q13.33 by HGNC
- 19q13.33 by Ensembl
LMTK3 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LMTK3 Gene
Proteins for LMTK3 Gene
-
Protein details for LMTK3 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q96Q04-LMTK3_HUMAN
- Recommended name:
- Serine/threonine-protein kinase LMTK3
- Protein Accession:
- Q96Q04
- Q4G0U1
Protein attributes for LMTK3 Gene
- Size:
- 1460 amino acids
- Molecular mass:
- 153661 Da
- Cofactor:
- Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
- Quaternary structure:
-
- Interacts with ESR1 (PubMed:21602804). Interacts with AP-2 complex subunit alpha (By similarity).
- SequenceCaution:
-
- Sequence=AAH36690.1; Type=Frameshift; Positions=809; Evidence={ECO:0000305}; Sequence=BAB67776.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
Protein Expression for LMTK3 Gene
Post-translational modifications for LMTK3 Gene
Other Protein References for LMTK3 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
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-
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-
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-
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Protein Products
-
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-
Abcam proteins for LMTK3
Assay Products
No data available for DME Specific Peptides for LMTK3 Gene
Domains & Families for LMTK3 Gene
Gene Families for LMTK3 Gene
- HGNC:
- IUPHAR :
- Human Protein Atlas (HPA):
-
- Enzymes
- Predicted membrane proteins
Protein Domains for LMTK3 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for LMTK3 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q96Q04UniProtKB/Swiss-Prot:
LMTK3_HUMAN :- Belongs to the protein kinase superfamily. Tyr protein kinase family.
- Family:
-
- Belongs to the protein kinase superfamily. Tyr protein kinase family.
Function for LMTK3 Gene
Molecular function for LMTK3 Gene
- UniProtKB/Swiss-Prot Function:
- Protein kinase which phosphorylates ESR1 (in vitro) and protects it against proteasomal degradation. May also regulate ESR1 levels indirectly via a PKC-AKT-FOXO3 pathway where it decreases the activity of PKC and the phosphorylation of AKT, thereby increasing binding of transcriptional activator FOXO3 to the ESR1 promoter and increasing ESR1 transcription (PubMed:21602804). Involved in endocytic trafficking of N-methyl-D-aspartate receptors (NMDAR) in neurons (By similarity).
- UniProtKB/Swiss-Prot CatalyticActivity:
- ATP + a protein = ADP + a phosphoprotein.
Enzyme Numbers (IUBMB) for LMTK3 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000166 | nucleotide binding | IEA | -- |
| GO:0003674 | molecular_function | ND | -- |
| GO:0004672 | protein kinase activity | IEA | -- |
| GO:0004674 | protein serine/threonine kinase activity | IEA | -- |
| GO:0005524 | ATP binding | IEA | -- |
Phenotypes for LMTK3 Gene
- MGI mutant phenotypes for LMTK3:
- inferred from 1 alleles
- GenomeRNAi human phenotypes for LMTK3:
-
- Decreased substrate adherent cell growth
- Decreased CYP1A1 activity after TCDD stimulation
- Dynamic nuclei (hole, folded or small irregular)
- Moderately decreased NFAT1-GFP nuclear translocation
- Increased cell death HMECs cells
- Decreased viability of wild-type and TP53 knockout cells, decreased TP53 protein expression ratio (wild-type / TP53 knockout cells)
- Decreased ionizing radiation sensitivity
- Downregulation of Wnt pathway after Wnt3A stimulation
- Decreased Hepatitis C Virus pseudoparticles (HCVpp; H77; genotype 1a) infection
- Decreased viability
- Increased cell migration
- Decreased cell migration
- Increased caspase activity
- Increased vaccinia virus (VACV) infection
- Increased gamma-H2AX phosphorylation
- shRNA abundance <= 50%
- Synthetic lethal with vaccinia virus (VACV) infection
Animal Models for LMTK3 Gene
- MGI Knock Outs for LMTK3:
-
- Lmtk3 Lmtk3<tm1Tya>
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
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-
CRISPR Products
-
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- Applied Biological Materials CRISPR for LMTK3
-
Vectors and viruses for KO, Activation, Repression, and more
-
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miRNA for LMTK3 Gene
- miRTarBase miRNAs that target LMTK3
miRNA Products
Inhibitory RNA Products
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Clone Products
- Sino Biological Human cDNA Clone for LMTK3
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-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Phenotypes From GWAS Catalog , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for LMTK3 Gene
Localization for LMTK3 Gene
Subcellular locations from UniProtKB/Swiss-Prot for LMTK3 Gene
- Membrane; Single-pass membrane protein. Cell projection, axon. Cell projection, dendrite. Golgi apparatus membrane. Note=Punctate pattern in cell projections.
| Compartment | Confidence |
|---|---|
| golgi apparatus | 4 |
| plasma membrane | 3 |
| extracellular | 1 |
| endoplasmic reticulum | 1 |
| lysosome | 1 |
- Cell Junctions (2)
- Nucleoplasm (2)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | -- |
| GO:0005575 | cellular_component | ND | -- |
| GO:0005794 | Golgi apparatus | IEA | -- |
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | IEA | -- |
Pathways & Interactions for LMTK3 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | GPCR Pathway |
.73
.62
|
.55
|
| 2 | ERK Signaling |
.61
.58
|
.49
|
| 3 | Nanog in Mammalian ESC Pluripotency |
.61
|
.48
|
| 4 | Actin Nucleation by ARP-WASP Complex |
.41
|
|
| 5 | Activation of cAMP-Dependent PKA | ||
Pathways by source for LMTK3 Gene
Interacting Proteins for LMTK3 Gene
GPS-Prot Interaction Network for LMTK3
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006468 | protein phosphorylation | IEA | -- |
| GO:0010923 | negative regulation of phosphatase activity | IDA | 19389623 |
| GO:0016310 | phosphorylation | IEA | -- |
No data available for SIGNOR curated interactions for LMTK3 Gene
Transcripts for LMTK3 Gene
mRNA/cDNA for LMTK3 Gene
- (3) REFSEQ mRNAs :
- (3) Additional mRNA sequences :
- (20) Selected AceView cDNA sequences:
- (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000600059 5113 bps (uc061aua.1)
- ENST00000270238 4972 bps (uc002pjk.3)
Unigene Clusters for LMTK3 Gene
- Lemur tyrosine kinase 3:
- Representative Sequences:
CRISPR Products
-
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-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for LMTK3
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miRNA Products
Inhibitory RNA Products
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Clone Products
- Sino Biological Human cDNA Clone for LMTK3
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-
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Expression for LMTK3 Gene
mRNA differential expression in normal tissues according to GTEx for LMTK3 Gene
This gene is overexpressed in Brain - Cortex (x5.1), Brain - Nucleus accumbens (basal ganglia) (x5.1), Brain - Putamen (basal ganglia) (x4.6), Brain - Frontal Cortex (BA9) (x4.2), and Brain - Caudate (basal ganglia) (x4.2).
This gene is overexpressed in Fetal Brain (30.3), Serum (22.6), and Frontal cortex (11.9).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LMTK3 Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of LMTK3 Gene:
LMTK3SOURCE GeneReport for Unigene cluster for LMTK3 Gene:
Hs.207426Evidence on tissue expression from TISSUES for LMTK3 Gene
- Nervous system(4.3)
Primer Products
-
OriGene qPCR primer pairs for LMTK3
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Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for LMTK3 Gene
Orthologs for LMTK3 Gene
This gene was present in the common ancestor of eukaryotes.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | LMTK3 34 33 |
|
OneToOne | |
| dog (Canis familiaris) |
Mammalia | LMTK3 34 33 |
|
OneToOne | |
| cow (Bos Taurus) |
Mammalia | LMTK3 34 33 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | LMTK3 34 |
|
OneToOne | |
| mouse (Mus musculus) |
Mammalia | Lmtk3 16 34 33 |
|
||
| rat (Rattus norvegicus) |
Mammalia | LOC691056 33 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | LMTK3 34 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | lmtk3 33 |
|
||
| zebrafish (Danio rerio) |
Actinopterygii | LMTK3 34 |
|
OneToOne | |
| rice (Oryza sativa) |
Liliopsida | Os.46789 33 |
|
- Species where no ortholog for LMTK3 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
Evolution for LMTK3 Gene
- ENSEMBL:
- Gene Tree for LMTK3 (if available)
- TreeFam:
- Gene Tree for LMTK3 (if available)
- Aminode:
- Evolutionary constrained regions (ECRs) for LMTK3: view image
Paralogs for LMTK3 Gene
(6) SIMAP similar genes for LMTK3 Gene using alignment to 1 proteins:
- LMTK3_HUMAN
Variants for LMTK3 Gene
| SNP ID | Clin | Chr 19 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000036197 | -- | 48,514,091(-) | G/C | upstream_transcript_variant | |
| rs1000102552 | -- | 48,502,385(-) | T/A | intron_variant | |
| rs1000107611 | -- | 48,515,673(-) | T/C | upstream_transcript_variant | |
| rs1000257394 | -- | 48,496,217(-) | C/T | intron_variant | |
| rs1000305799 | -- | 48,501,632(-) | C/T | intron_variant |
Gene Damage Index Score:
2.92;
49.00% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for LMTK3 Gene
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LMTK3 Gene
Disorders for LMTK3 Gene
Additional Disease Information for LMTK3
No disorders were found for LMTK3 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LMTK3 Gene
Publications for LMTK3 Gene
- Kinome screening for regulators of the estrogen receptor identifies LMTK3 as a new therapeutic target in breast cancer. (PMID: 21602804) Giamas G … Stebbing J (Nature medicine 2011) 3 4 58
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
- Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins. (PMID: 11572484) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 2001) 3 4 58
- LMTK3 knockdown retards cell growth and invasion and promotes apoptosis in thyroid cancer. (PMID: 28260052) Lu L … Shen B (Molecular medicine reports 2017) 3 58
- Lemur Tyrosine Kinase-3 Suppresses Growth of Prostate Cancer Via the AKT and MAPK Signaling Pathways. (PMID: 28848113) Sun P … Xu W (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2017) 3 58
Products for LMTK3 Gene
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Sources for LMTK3 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
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