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Aliases for LMO7DN-IT1 Gene

Subcategory (RNA class) for LMO7DN-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LMO7DN-IT1 Gene

  • LMO7DN Intronic Transcript 1 2 3 5
  • C13orf45 Intronic Transcript 1 2 3
  • TCONS_00021569 3
  • C13orf45-IT1 3

External Ids for LMO7DN-IT1 Gene

Previous HGNC Symbols for LMO7DN-IT1 Gene

  • C13orf45-IT1

Previous GeneCards Identifiers for LMO7DN-IT1 Gene

  • GC00U934738

Summaries for LMO7DN-IT1 Gene

GeneCards Summary for LMO7DN-IT1 Gene

LMO7DN-IT1 (LMO7DN Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LMO7DN-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LMO7DN-IT1 Gene

Genomics for LMO7DN-IT1 Gene

GeneHancer (GH) Regulatory Elements for LMO7DN-IT1 Gene

Promoters and enhancers for LMO7DN-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I075876 Enhancer 0.9 Ensembl ENCODE 550.8 -0.3 -324 0.3 CTCF FOXA2 MAX RAD21 CHAMP1 CC2D1A ARID2 ZNF143 SMC3 BCLAF1 LMO7DN-IT1 LMO7DN
GH13I075877 Enhancer 0.2 ENCODE 550.8 +0.4 354 0.2 LMO7DN-IT1 LMO7DN GC13M075900
GH13I075861 Enhancer 0.4 ENCODE 8.3 -14.8 -14828 1.2 SRF MNT GC13M075860 LMO7DN-IT1 LMO7-AS1 LMO7DN
GH13I075869 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 0.4 -5.9 -5931 2 CTCF ZNF654 L3MBTL2 TRIM22 ZNF384 REST RAD21 NR2F2 SMC3 ZNF143 LMO7DN LMO7-AS1 LMO7DN-IT1
GH13I075873 Enhancer 0.5 FANTOM5 0.8 -3.7 -3729 0.2 MITF POLR2A MAX LMO7DN LMO7-AS1 LMO7DN-IT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LMO7DN-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LMO7DN-IT1 Gene

Genomic Locations for LMO7DN-IT1 Gene
chr13:75,876,886-75,881,127
(GRCh38/hg38)
Size:
4,242 bases
Orientation:
Plus strand

Genomic View for LMO7DN-IT1 Gene

Genes around LMO7DN-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LMO7DN-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LMO7DN-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LMO7DN-IT1 Gene

Proteins for LMO7DN-IT1 Gene

Post-translational modifications for LMO7DN-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LMO7DN-IT1 Gene

Domains & Families for LMO7DN-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LMO7DN-IT1 Gene

Function for LMO7DN-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LMO7DN-IT1 Gene

Localization for LMO7DN-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LMO7DN-IT1 Gene

Pathways & Interactions for LMO7DN-IT1 Gene

SuperPathways for LMO7DN-IT1 Gene

No Data Available

Interacting Proteins for LMO7DN-IT1 Gene

Gene Ontology (GO) - Biological Process for LMO7DN-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LMO7DN-IT1 Gene

Drugs & Compounds for LMO7DN-IT1 Gene

No Compound Related Data Available

Transcripts for LMO7DN-IT1 Gene

mRNA/cDNA for LMO7DN-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LMO7DN-IT1 Gene

No ASD Table

Relevant External Links for LMO7DN-IT1 Gene

GeneLoc Exon Structure for
LMO7DN-IT1
ECgene alternative splicing isoforms for
LMO7DN-IT1

Expression for LMO7DN-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LMO7DN-IT1 Gene

genes like me logo Genes that share expression patterns with LMO7DN-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LMO7DN-IT1 Gene

Orthologs for LMO7DN-IT1 Gene

Evolution for LMO7DN-IT1 Gene

ENSEMBL:
Gene Tree for LMO7DN-IT1 (if available)
TreeFam:
Gene Tree for LMO7DN-IT1 (if available)

No data available for Orthologs for LMO7DN-IT1 Gene

Paralogs for LMO7DN-IT1 Gene

No data available for Paralogs for LMO7DN-IT1 Gene

Variants for LMO7DN-IT1 Gene

Sequence variations from dbSNP and Humsavar for LMO7DN-IT1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000318782 -- 75,879,534(+) A/G intron_variant
rs1000984245 -- 75,878,917(+) G/C intron_variant
rs1002035179 -- 75,878,363(+) G/A/C intron_variant
rs1003048054 -- 75,877,000(+) T/C intron_variant
rs1005049565 -- 75,879,655(+) TT/T intron_variant

Additional Variant Information for LMO7DN-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LMO7DN-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LMO7DN-IT1 Gene

Disorders for LMO7DN-IT1 Gene

Additional Disease Information for LMO7DN-IT1

No disorders were found for LMO7DN-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LMO7DN-IT1 Gene

Publications for LMO7DN-IT1 Gene

No publications were found for LMO7DN-IT1 Gene.

Products for LMO7DN-IT1 Gene

Sources for LMO7DN-IT1 Gene

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