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Aliases for LMO7-AS1 Gene

Subcategory (RNA class) for LMO7-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LMO7-AS1 Gene

  • LMO7 Antisense RNA 1 2 3 5
  • UCHL3 Antisense RNA 1 2 3
  • UCHL3-AS1 3

External Ids for LMO7-AS1 Gene

Previous GeneCards Identifiers for LMO7-AS1 Gene

  • GC00U933350
  • GC13M076204
  • GC13M076179

Summaries for LMO7-AS1 Gene

GeneCards Summary for LMO7-AS1 Gene

LMO7-AS1 (LMO7 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LMO7-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LMO7-AS1 Gene

Genomics for LMO7-AS1 Gene

GeneHancer (GH) Regulatory Elements for LMO7-AS1 Gene

Promoters and enhancers for LMO7-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I075634 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 608 -0.5 -493 3 ARID4B SIN3A DMAP1 GLI4 ZNF2 ZNF48 GLIS2 ZNF213 ZNF202 SP3 LMO7-AS1 COMMD6 UCHL3 GC13P075644 LMO7 ENSG00000261553
GH13I075632 Enhancer 1 ENCODE dbSUPER 66.4 +2.5 2455 1.9 FOXA2 ARID4B DMAP1 ZNF48 ZSCAN9 RARA ZNF121 CREM THAP11 MIXL1 LMO7-AS1 COMMD6 UCHL3 ENSG00000228444 LMO7 ENSG00000261553
GH13I075758 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 7.7 -125.8 -125779 5.8 PKNOX1 FOXA2 SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 IRF4 ETS1 LMO7 LMO7DN LMO7-AS1 COMMD6 GC13M075699 GC13M075860 ENSG00000261553
GH13I075537 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 8.7 +98.1 98107 1.8 PKNOX1 CLOCK ARNT ARID4B SIN3A DMAP1 IRF4 YY1 POLR2B E2F8 COMMD6 UCHL3 LMO7-AS1 GC13M075537 GC13P075531
GH13I075548 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 8 +86.1 86122 2.3 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 SLC30A9 ZNF213 COMMD6 UCHL3 ENSG00000261553 LMO7-AS1 GC13M075563
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LMO7-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LMO7-AS1 Gene

Genomic Locations for LMO7-AS1 Gene
chr13:75,604,700-75,635,994
(GRCh38/hg38)
Size:
31,295 bases
Orientation:
Minus strand
chr13:76,178,836-76,210,130
(GRCh37/hg19)

Genomic View for LMO7-AS1 Gene

Genes around LMO7-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LMO7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LMO7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LMO7-AS1 Gene

Proteins for LMO7-AS1 Gene

Post-translational modifications for LMO7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LMO7-AS1 Gene

Domains & Families for LMO7-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LMO7-AS1 Gene

Function for LMO7-AS1 Gene

Phenotypes From GWAS Catalog for LMO7-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LMO7-AS1 Gene

Localization for LMO7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LMO7-AS1 Gene

Pathways & Interactions for LMO7-AS1 Gene

SuperPathways for LMO7-AS1 Gene

No Data Available

Interacting Proteins for LMO7-AS1 Gene

Gene Ontology (GO) - Biological Process for LMO7-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LMO7-AS1 Gene

Drugs & Compounds for LMO7-AS1 Gene

No Compound Related Data Available

Transcripts for LMO7-AS1 Gene

mRNA/cDNA for LMO7-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LMO7-AS1 Gene

No ASD Table

Relevant External Links for LMO7-AS1 Gene

GeneLoc Exon Structure for
LMO7-AS1
ECgene alternative splicing isoforms for
LMO7-AS1

Expression for LMO7-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LMO7-AS1 Gene

genes like me logo Genes that share expression patterns with LMO7-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LMO7-AS1 Gene

Orthologs for LMO7-AS1 Gene

Evolution for LMO7-AS1 Gene

ENSEMBL:
Gene Tree for LMO7-AS1 (if available)
TreeFam:
Gene Tree for LMO7-AS1 (if available)

No data available for Orthologs for LMO7-AS1 Gene

Paralogs for LMO7-AS1 Gene

No data available for Paralogs for LMO7-AS1 Gene

Variants for LMO7-AS1 Gene

Sequence variations from dbSNP and Humsavar for LMO7-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000009905 -- 75,622,796(-) C/G intron_variant
rs1000014252 -- 75,618,341(-) CTT/ intron_variant
rs1000052381 -- 75,633,110(-) G/A intron_variant
rs1000160437 -- 75,626,611(-) G/T intron_variant
rs1000213874 -- 75,611,384(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LMO7-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3257n54 CNV gain 21841781
dgv3258n54 CNV loss 21841781
dgv3259n54 CNV loss 21841781
esv22314 CNV loss 19812545
esv2747675 CNV deletion 23290073
esv2751152 CNV loss 17911159
esv3632750 CNV loss 21293372
nsv1070182 CNV deletion 25765185
nsv472396 CNV novel sequence insertion 20440878
nsv521444 CNV gain 19592680
nsv562348 CNV gain+loss 21841781
nsv819632 CNV loss 19587683

Additional Variant Information for LMO7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LMO7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LMO7-AS1 Gene

Disorders for LMO7-AS1 Gene

Additional Disease Information for LMO7-AS1

No disorders were found for LMO7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LMO7-AS1 Gene

Publications for LMO7-AS1 Gene

No publications were found for LMO7-AS1 Gene.

Products for LMO7-AS1 Gene

Sources for LMO7-AS1 Gene

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