Aliases for LMNTD2-AS1 Gene

Subcategory (RNA class) for LMNTD2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LMNTD2-AS1 Gene

  • LMNTD2 Antisense RNA 1 2 3 5
  • LMNTD2-AS1 2 5
  • NONHSAG007320.2 91
  • HSALNG0081989 164
  • Lnc-RASSF7-1 165

External Ids for LMNTD2-AS1 Gene

Previous GeneCards Identifiers for LMNTD2-AS1 Gene

  • GC11P000559

Summaries for LMNTD2-AS1 Gene

GeneCards Summary for LMNTD2-AS1 Gene

LMNTD2-AS1 (LMNTD2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LMNTD2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LMNTD2-AS1 Gene

Genomics for LMNTD2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LMNTD2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J000554 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 606.5 -1.7 -1711 2.6 CTCF ZNF692 ZIC2 PKNOX1 RAD21 POLR2A EZH2 GABPA ZFX TCF12 LMNTD2-AS1 RASSF7 LMNTD2 HRAS TMEM80 LRRC56 PHRF1 RNH1 OR4F2P lnc-HRAS-2
GH11J000574 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 9 +21.2 21207 7.2 SP1 GATAD2A ATF7 PRDM10 ZNF629 TFE3 SIX5 NFKBIZ POLR2A ZNF692 PHRF1 piR-42043-001 TMEM80 HRAS LMNTD2-AS1 IRF7 ENSG00000255158 RNH1 PKP3 LOC143666
GH11J000405 Promoter/Enhancer 1.9 Ensembl ENCODE CraniofacialAtlas dbSUPER 4.9 -150.0 -150006 2.2 SP1 HNRNPL IKZF1 CTCF ZNF692 LARP7 ZNF143 MTA2 ZIC2 RBFOX2 SIGIRR LMNTD2-AS1 MN309219 PKP3 lnc-SIGIRR-1
GH11J000369 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 4.6 -187.3 -187311 3 HNRNPL CREB1 ZNF629 ZNF692 ZIC2 RBFOX2 POLR2A PATZ1 REST ZNF600 B4GALNT4 NONHSAG007304.2 SIGIRR RPLP2 LMNTD2-AS1 HSALNG0081960 PKP3
GH11J000514 Enhancer 0.7 Ensembl ENCODE dbSUPER 12.8 -42.7 -42739 3.7 CEBPB CEBPG lnc-LRRC56-1 LRRC56 RNH1 HRAS LMNTD2-AS1 RASSF7 LMNTD2 PTDSS2 CEND1 SLC25A22
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LMNTD2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LMNTD2-AS1 Gene

Genomic Locations for LMNTD2-AS1 Gene
chr11:557,012-560,108
(GRCh38/hg38)
Size:
3,097 bases
Orientation:
Plus strand
chr11:556,958-560,113
(GRCh37/hg19)
Size:
3,156 bases
Orientation:
Plus strand

Genomic View for LMNTD2-AS1 Gene

Genes around LMNTD2-AS1 on UCSC Golden Path with GeneCards custom track
LMNTD2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LMNTD2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LMNTD2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LMNTD2-AS1 Gene

Proteins for LMNTD2-AS1 Gene

Post-translational modifications for LMNTD2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LMNTD2-AS1 Gene

Domains & Families for LMNTD2-AS1 Gene

Gene Families for LMNTD2-AS1 Gene

genes like me logo Genes that share domains with LMNTD2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LMNTD2-AS1 Gene

Function for LMNTD2-AS1 Gene

Phenotypes From GWAS Catalog for LMNTD2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LMNTD2-AS1 Gene

Localization for LMNTD2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LMNTD2-AS1 Gene

Pathways & Interactions for LMNTD2-AS1 Gene

PathCards logo

SuperPathways for LMNTD2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LMNTD2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LMNTD2-AS1 Gene

Drugs & Compounds for LMNTD2-AS1 Gene

No Compound Related Data Available

Transcripts for LMNTD2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LMNTD2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000057C08C_9606 lncRNA 537 4

Ensembl: ENST00000533844 (view in UCSC) ,

LncBook: HSALNT0170806,

LNCipedia: lnc-RASSF7-1:3,

NONCODE: NONHSAT017275.2,

URS00005703C7_9606 lncRNA 527 3

Ensembl: ENST00000527113 (view in UCSC) ,

LncBook: HSALNT0170804,

NONCODE: NONHSAT017274.2,

URS0000488C4C_9606 lncRNA 2210 2

Ensembl: ENST00000527620 (view in UCSC) ,

NONCODE: NONHSAT017272.2,

URS0000BC4643_9606 lncRNA 536 2

HGNC: 41204,

RefSeq: NR_147608,

URS0000BC45EB_9606 lncRNA 543 1

RefSeq: NR_147607,

LMNTD2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LMNTD2-AS1 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LMNTD2-AS1 Gene

No ASD Table

Relevant External Links for LMNTD2-AS1 Gene

GeneLoc Exon Structure for
LMNTD2-AS1

Expression for LMNTD2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LMNTD2-AS1

SOURCE GeneReport for Unigene cluster for LMNTD2-AS1 Gene:

Hs.560022
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LMNTD2-AS1 Gene

Orthologs for LMNTD2-AS1 Gene

Evolution for LMNTD2-AS1 Gene

ENSEMBL:
Gene Tree for LMNTD2-AS1 (if available)
TreeFam:
Gene Tree for LMNTD2-AS1 (if available)

No data available for Orthologs for LMNTD2-AS1 Gene

Paralogs for LMNTD2-AS1 Gene

No data available for Paralogs for LMNTD2-AS1 Gene

Variants for LMNTD2-AS1 Gene

Additional dbSNP identifiers (rs#s) for LMNTD2-AS1 Gene

Additional Variant Information for LMNTD2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LMNTD2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LMNTD2-AS1 Gene

Disorders for LMNTD2-AS1 Gene

Additional Disease Information for LMNTD2-AS1

No disorders were found for LMNTD2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LMNTD2-AS1 Gene

Publications for LMNTD2-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LMNTD2-AS1 Gene

Products for LMNTD2-AS1 Gene

Sources for LMNTD2-AS1 Gene